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The map label for this gene is yciR [C]

Identifier: 167625010

GI number: 167625010

Start: 3779437

End: 3780912

Strand: Reverse

Name: yciR [C]

Synonym: Shal_3098

Alternate gene names: 167625010

Gene position: 3780912-3779437 (Counterclockwise)

Preceding gene: 167625011

Following gene: 167625008

Centisome position: 72.34

GC content: 43.77

Gene sequence:

>1476_bases
ATGGATAGTTTTTGGATGATTTCCACCGTGTGTTTGTTGCTGGTTATTTGGTTAGCATGCGCACTCTGGCGGCAGCAAAA
ACTTCGCCACTTTGTAAGTCAGTTACTTGAGTCCTTTGAGCAGCGCGGCTTTGTTCTTCCCGCTAACACCTCTCTATCTG
TACAGCTGAGTGAATTAACAGATTCCGTTAATCAGTTACATATTCAGAGCCAGCAAGCCGAGTGCGATAAACTTACCGAG
CTTGATAATCGTTTGAGTATGAAGCGCAAAATGGCCCAATTAATGCCGCTGAATAAAGGCAGCTTGGTCCTGCTGGATAT
TTATCGCTTTCGTTATGTAAATGACCTATTTGGATTTAACTTTGGTGATGAGCTACTAAAACAGATGGCAGCAAGAGTAA
AAGACTTATCTCCCGATGGGTCTTTGATAGCCAGAATGAATGAAGATGAATTTCTTATCTATTTCACTAGCGCAATGTCG
TCACCGCAACTACTGCAACTGATCGATAATCTACAACTACCCTACGATATTTTTGGTAGTATCATCACCACAAGAGTGCA
GGTGGGGCACTTGGCTTTAGAGCCTTTTCATAGTGACATTAGCACCATGCTACGTAGGCTTGATTTAGCACTAAAAAAAG
CCAAGACTCATGATGTCGCACTATCTGAATATCTACTGGGTGATGATGTGGTGCAACTACGAGAGGTGTCCATTATTAAT
AGCCTTGCTAAGGCGTTACGTGATGGTGAACTTTATATGGTTTATCAGCCTAAGCAGAGCTTCCCCAAAGGAGATTGCCA
GCAAGTTGAGGCATTAATGCGTTGGCAGCACCCGCAACTTGGCAGCATATCTCCTGCCGAGTTTATTCCACTTGCAGAGT
ATTCTGGCATGATCGATATCGTCAGCCAATGGGTACTCGATGAGGTGTTTGCCCAGCAAGCCCTATGGCGCCAAAAAGAG
ATTAAATTACAGGTGGCTGTGAACCTGTCGACTCAAGACTTGCGTAGTGCCTCCTTGATAACAGGCATAAAAGCAAGACT
AGAGCAGTATCAACTCGAGGCAAGCGCTATCTCGATTGAAATCACCGAAAGTAAATTGATGCAAGATCTCGATGGTGCCG
TAGCAACGATTAACCACCTGCGCCAGCTTGGCGTCGATGTTGCTATTGATGATTTTGGTACTGGTCACTCCTCGTTGGCT
TACCTTAAGTACTTACCTGTCGATGAAGTGAAGATAGATAAGGCATTTCTAGATGATTTAGACGTTGATGCAAGAGCTTG
GCACATTATGGATACAAGTATCCGATTAGCCAAAGGCTTAGGCTTTAAGGTGACGGTTGAAGGCGTTGAGACCGAAGAGA
TATTACAATTATTGCTGGGTATGGGCGTAGACAAAGTTCAAGGGGATATTTTTTCAAAACCGTTAAAACCTAAAGAGCTT
GAATCACGTTGGCCTAAATTAAGTGATGCAGGTTAG

Upstream 100 bases:

>100_bases
TGAAAACTTAAACGATAGTGTGTGCTGGCATAGGGGCTAGCAGGCACTATAGTTTATAACAAAAGAAATTGAGATTTTAT
AACGGTAAAAGTACTCATAG

Downstream 100 bases:

>100_bases
TCGTATAAACAGGGTAAACAATTAAAGGTAAGCAGCTCAAGCAAGAGCTTATTACCTTTAATACTCATTACATTTTAAAA
GATAACGACTTCAGAAAAAG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MDSFWMISTVCLLLVIWLACALWRQQKLRHFVSQLLESFEQRGFVLPANTSLSVQLSELTDSVNQLHIQSQQAECDKLTE
LDNRLSMKRKMAQLMPLNKGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMS
SPQLLQLIDNLQLPYDIFGSIITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDVVQLREVSIIN
SLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISPAEFIPLAEYSGMIDIVSQWVLDEVFAQQALWRQKE
IKLQVAVNLSTQDLRSASLITGIKARLEQYQLEASAISIEITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLA
YLKYLPVDEVKIDKAFLDDLDVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGVDKVQGDIFSKPLKPKEL
ESRWPKLSDAG

Sequences:

>Translated_491_residues
MDSFWMISTVCLLLVIWLACALWRQQKLRHFVSQLLESFEQRGFVLPANTSLSVQLSELTDSVNQLHIQSQQAECDKLTE
LDNRLSMKRKMAQLMPLNKGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMS
SPQLLQLIDNLQLPYDIFGSIITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDVVQLREVSIIN
SLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISPAEFIPLAEYSGMIDIVSQWVLDEVFAQQALWRQKE
IKLQVAVNLSTQDLRSASLITGIKARLEQYQLEASAISIEITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLA
YLKYLPVDEVKIDKAFLDDLDVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGVDKVQGDIFSKPLKPKEL
ESRWPKLSDAG
>Mature_491_residues
MDSFWMISTVCLLLVIWLACALWRQQKLRHFVSQLLESFEQRGFVLPANTSLSVQLSELTDSVNQLHIQSQQAECDKLTE
LDNRLSMKRKMAQLMPLNKGSLVLLDIYRFRYVNDLFGFNFGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMS
SPQLLQLIDNLQLPYDIFGSIITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDVVQLREVSIIN
SLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISPAEFIPLAEYSGMIDIVSQWVLDEVFAQQALWRQKE
IKLQVAVNLSTQDLRSASLITGIKARLEQYQLEASAISIEITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLA
YLKYLPVDEVKIDKAFLDDLDVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGVDKVQGDIFSKPLKPKEL
ESRWPKLSDAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=33.2547169811321, Blast_Score=218, Evalue=6e-58,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=39.662447257384, Blast_Score=161, Evalue=8e-41,
Organism=Escherichia coli, GI87081921, Length=241, Percent_Identity=35.6846473029046, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=33.1914893617021, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=31.9838056680162, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=32.5, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.469387755102, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI226510982, Length=244, Percent_Identity=32.7868852459016, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1788502, Length=326, Percent_Identity=29.1411042944785, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=33.4677419354839, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1787055, Length=372, Percent_Identity=24.7311827956989, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=241, Percent_Identity=26.5560165975104, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787410, Length=117, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 55494; Mature: 55494

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSFWMISTVCLLLVIWLACALWRQQKLRHFVSQLLESFEQRGFVLPANTSLSVQLSELT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHH
DSVNQLHIQSQQAECDKLTELDNRLSMKRKMAQLMPLNKGSLVLLDIYRFRYVNDLFGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCC
FGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMSSPQLLQLIDNLQLPYDIFGS
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHH
IITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDVVQLREVSIIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISPAEFIPLAEYSGMIDI
HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCHHHHCCHHHH
VSQWVLDEVFAQQALWRQKEIKLQVAVNLSTQDLRSASLITGIKARLEQYQLEASAISIE
HHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
ITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLAYLKYLPVDEVKIDKAFLDDL
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHEEECCCCHHHHHHHHHCCC
DVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGVDKVQGDIFSKPLKPKEL
CCCCCEEEEECCHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCHHH
ESRWPKLSDAG
HHHCCCCCCCC
>Mature Secondary Structure
MDSFWMISTVCLLLVIWLACALWRQQKLRHFVSQLLESFEQRGFVLPANTSLSVQLSELT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHH
DSVNQLHIQSQQAECDKLTELDNRLSMKRKMAQLMPLNKGSLVLLDIYRFRYVNDLFGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCC
FGDELLKQMAARVKDLSPDGSLIARMNEDEFLIYFTSAMSSPQLLQLIDNLQLPYDIFGS
CHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHH
IITTRVQVGHLALEPFHSDISTMLRRLDLALKKAKTHDVALSEYLLGDDVVQLREVSIIN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
SLAKALRDGELYMVYQPKQSFPKGDCQQVEALMRWQHPQLGSISPAEFIPLAEYSGMIDI
HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCHHHHCCHHHH
VSQWVLDEVFAQQALWRQKEIKLQVAVNLSTQDLRSASLITGIKARLEQYQLEASAISIE
HHHHHHHHHHHHHHHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
ITESKLMQDLDGAVATINHLRQLGVDVAIDDFGTGHSSLAYLKYLPVDEVKIDKAFLDDL
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHEEECCCCHHHHHHHHHCCC
DVDARAWHIMDTSIRLAKGLGFKVTVEGVETEEILQLLLGMGVDKVQGDIFSKPLKPKEL
CCCCCEEEEECCHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHCCHHHCCCCCCHHH
ESRWPKLSDAG
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]