| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624985
Identifier: 167624985
GI number: 167624985
Start: 3748971
End: 3749705
Strand: Reverse
Name: 167624985
Synonym: Shal_3072
Alternate gene names: NA
Gene position: 3749705-3748971 (Counterclockwise)
Preceding gene: 167624986
Following gene: 167624984
Centisome position: 71.74
GC content: 47.62
Gene sequence:
>735_bases GTGAGCTGCTTACAGGATAAGTTAAAGCAAGCGTATTTAGCGGGGGAATTAGCAGAGGCTGTTGCAGGCCTAGGTCTCGA GGACTTAGTCTTCGATGCCAGCCAGTATTTGGTTGAGGATGTCATTGCTAGTGCTAATAGTGCAAACAGTGAAACGCTCA TCGTGTTGACTCATGGCGCTGGGGCAAACATGCAGCATGAGTTTATGACGGCAATGGCTAAAGGCATCGCCGCGAGTGGC GCTCGTGTCGTGCGTTTTAATTTTCCTTACATGCGTGCTAATGCCATCGACGGTAAACGCCGCCCACCGGATAGAGCTCC AAAGCTTATCGCCGATTATGCGCTGCAGCTTAGTATTCTAAAGCTGCAGTTTAAGCCTAAAAAAATCTACTTAGTAGGCA AGTCGATGGGTGGGCGCATGTCGACAATCTTGGCCGAGAGCCTAAAGGTTGATGGTGTGGTGTGCTTAGGCTATCCCTTT ATTCCACTCAGTGGTGGTGAACCGCGTTTAGAGCCGATAGAGAACTGTTTGGCACCCATCATGGTGATCCAAGGTGAGCG CGATAAGTTTGGTCATAAAGGGTTAGTTGAAACTTGGCCGATAATGAAAAAGGCCCAATTGCATTGGTTAACTGATGGCG ATCATGGTTTTAAACCACGCAAGTCGTCAGGGACCAGCTTAGAGGCTAATCTGGCAGAAGCTATCTCGTTTATACGAAAT TTTATCAATAAGTAA
Upstream 100 bases:
>100_bases AATGCATATTATCTAGTGTGCCAGCAAAACCATGCCGAGATAGGTAAGGTTGCGGCCTTTAGAGAGTGGATGCTTGACAT GTTTGAAGAGGAGACCCGTA
Downstream 100 bases:
>100_bases CCATAACTTTTGATATATAGTTACTTAGAGTGCAAATTATCTACCTGTCGACGGCTATGTCGATAGGCCTTTTGGAGGTT AAATGCGTCATGGATTTTTG
Product: dienelactone hydrolase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MSCLQDKLKQAYLAGELAEAVAGLGLEDLVFDASQYLVEDVIASANSANSETLIVLTHGAGANMQHEFMTAMAKGIAASG ARVVRFNFPYMRANAIDGKRRPPDRAPKLIADYALQLSILKLQFKPKKIYLVGKSMGGRMSTILAESLKVDGVVCLGYPF IPLSGGEPRLEPIENCLAPIMVIQGERDKFGHKGLVETWPIMKKAQLHWLTDGDHGFKPRKSSGTSLEANLAEAISFIRN FINK
Sequences:
>Translated_244_residues MSCLQDKLKQAYLAGELAEAVAGLGLEDLVFDASQYLVEDVIASANSANSETLIVLTHGAGANMQHEFMTAMAKGIAASG ARVVRFNFPYMRANAIDGKRRPPDRAPKLIADYALQLSILKLQFKPKKIYLVGKSMGGRMSTILAESLKVDGVVCLGYPF IPLSGGEPRLEPIENCLAPIMVIQGERDKFGHKGLVETWPIMKKAQLHWLTDGDHGFKPRKSSGTSLEANLAEAISFIRN FINK >Mature_243_residues SCLQDKLKQAYLAGELAEAVAGLGLEDLVFDASQYLVEDVIASANSANSETLIVLTHGAGANMQHEFMTAMAKGIAASGA RVVRFNFPYMRANAIDGKRRPPDRAPKLIADYALQLSILKLQFKPKKIYLVGKSMGGRMSTILAESLKVDGVVCLGYPFI PLSGGEPRLEPIENCLAPIMVIQGERDKFGHKGLVETWPIMKKAQLHWLTDGDHGFKPRKSSGTSLEANLAEAISFIRNF INK
Specific function: Unknown
COG id: COG3571
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26619; Mature: 26488
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSCLQDKLKQAYLAGELAEAVAGLGLEDLVFDASQYLVEDVIASANSANSETLIVLTHGA CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC GANMQHEFMTAMAKGIAASGARVVRFNFPYMRANAIDGKRRPPDRAPKLIADYALQLSIL CCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHEEEE KLQFKPKKIYLVGKSMGGRMSTILAESLKVDGVVCLGYPFIPLSGGEPRLEPIENCLAPI EEEECCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEECCCCCCCHHHHHHHHHCE MVIQGERDKFGHKGLVETWPIMKKAQLHWLTDGDHGFKPRKSSGTSLEANLAEAISFIRN EEEECCCCCCCCCCCHHHCCCHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH FINK HHCC >Mature Secondary Structure SCLQDKLKQAYLAGELAEAVAGLGLEDLVFDASQYLVEDVIASANSANSETLIVLTHGA CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC GANMQHEFMTAMAKGIAASGARVVRFNFPYMRANAIDGKRRPPDRAPKLIADYALQLSIL CCCHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHEEEE KLQFKPKKIYLVGKSMGGRMSTILAESLKVDGVVCLGYPFIPLSGGEPRLEPIENCLAPI EEEECCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCEEECCCCCCCHHHHHHHHHCE MVIQGERDKFGHKGLVETWPIMKKAQLHWLTDGDHGFKPRKSSGTSLEANLAEAISFIRN EEEECCCCCCCCCCCHHHCCCHHHCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH FINK HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA