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The map label for this gene is ygdD [C]

Identifier: 167624984

GI number: 167624984

Start: 3748502

End: 3748888

Strand: Reverse

Name: ygdD [C]

Synonym: Shal_3071

Alternate gene names: 167624984

Gene position: 3748888-3748502 (Counterclockwise)

Preceding gene: 167624985

Following gene: 167624983

Centisome position: 71.72

GC content: 45.48

Gene sequence:

>387_bases
ATGCGTCATGGATTTTTGCTGCTAGCAGCATTAAGTGGTTTCATTGCAGTAGCATTGGGTGCATTTGGTGCACACGGGTT
GAAAAACGTGGCAACAGCCGATTTAATTGCCATTTTTAATTTAGGTGTCGAGTATCAGTTTTATCATACCTTCGCACTGA
TCGTTGTGGCGTTTTCAGGACATTGGATTAAGTCTCGCTTGTTAGATTGGGCCGGTTATTTGTTTATCGCCGGTATGGTG
CTATTTTCGGGTTCACTATATCTATACGCATTAATCGGTGCGAAATGGACCGGACCGGTTACGCCAATGGGCGGTGTCTG
CTTTTTACTCGGCTGGTTGTTTATTGCGCTGGCCGTTTGGCGCAATCGAGTAAAAGAGTTGGACTAG

Upstream 100 bases:

>100_bases
AATTTTATCAATAAGTAACCATAACTTTTGATATATAGTTACTTAGAGTGCAAATTATCTACCTGTCGACGGCTATGTCG
ATAGGCCTTTTGGAGGTTAA

Downstream 100 bases:

>100_bases
AAGCGCTGTATATTATTGGATTGTTTGAAAGAATATAGAGCAGACTCGGGCAATGTATTAGACCTGCGTACTGATATTAA
ATTTTAGACAGTACACAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MRHGFLLLAALSGFIAVALGAFGAHGLKNVATADLIAIFNLGVEYQFYHTFALIVVAFSGHWIKSRLLDWAGYLFIAGMV
LFSGSLYLYALIGAKWTGPVTPMGGVCFLLGWLFIALAVWRNRVKELD

Sequences:

>Translated_128_residues
MRHGFLLLAALSGFIAVALGAFGAHGLKNVATADLIAIFNLGVEYQFYHTFALIVVAFSGHWIKSRLLDWAGYLFIAGMV
LFSGSLYLYALIGAKWTGPVTPMGGVCFLLGWLFIALAVWRNRVKELD
>Mature_128_residues
MRHGFLLLAALSGFIAVALGAFGAHGLKNVATADLIAIFNLGVEYQFYHTFALIVVAFSGHWIKSRLLDWAGYLFIAGMV
LFSGSLYLYALIGAKWTGPVTPMGGVCFLLGWLFIALAVWRNRVKELD

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=120, Percent_Identity=42.5, Blast_Score=76, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI193203406, Length=110, Percent_Identity=33.6363636363636, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14012; Mature: 14012

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHGFLLLAALSGFIAVALGAFGAHGLKNVATADLIAIFNLGVEYQFYHTFALIVVAFSG
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HWIKSRLLDWAGYLFIAGMVLFSGSLYLYALIGAKWTGPVTPMGGVCFLLGWLFIALAVW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RNRVKELD
HHHHHCCC
>Mature Secondary Structure
MRHGFLLLAALSGFIAVALGAFGAHGLKNVATADLIAIFNLGVEYQFYHTFALIVVAFSG
CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HWIKSRLLDWAGYLFIAGMVLFSGSLYLYALIGAKWTGPVTPMGGVCFLLGWLFIALAVW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
RNRVKELD
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA