| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is gltS [H]
Identifier: 167624951
GI number: 167624951
Start: 3704866
End: 3706095
Strand: Reverse
Name: gltS [H]
Synonym: Shal_3038
Alternate gene names: 167624951
Gene position: 3706095-3704866 (Counterclockwise)
Preceding gene: 167624953
Following gene: 167624950
Centisome position: 70.9
GC content: 44.96
Gene sequence:
>1230_bases ATGGAACCACAGTTAATTGAAATTAAAGACTTTGTCTCATTTACCTTAGCGATCATTGCGCTATTTATCGGTAAAAGTAT CATCTCTCGATACGAGCTACTCAGAAAATACAGTATTCCTGAGCCCGTTGTTGGTGGCTTCGCTTGCGCCGCTATCGTGG GCATCCTCTATTATGCCTTCGATATTCAGATCGAGTTTAACCTCGAAGTTCGCGATGTGCTGTTGCTCTATTTCTTTGCG GGAATTGGTTTAAAGGCTGATTTTGCAACACTGCTTAAAGGCGGCAAGCCGCTACTTATCTTAATTATGTTGGCGAGTGT ATTCATCTTCCTGCAAAACTTTACTGGTGTGACCATCGCCTCACTGTTCGGCTTAGATCCTAAGGCTGGCTTGATGTCGG GGTCGATTGCACTGATTGGTGGCGTTGGCACTGCAATGGCTTGGACCCCAACCTTTGTTGAAGAGCTGGGCATCGTCAAT GCGAGCGAGCTGGGCATTGCCTCTAATACCCTAGGACTAATTTCTGCCTGTGTGATTGGTGGTCCTATTGCAGCGTATTT GATGAAACGCCATAAGGTTCAGGCTAACCATGACTCAGAGCTTGATATTGGTACCAGCCATCAAGCTGGTTCATCACATA TTAAGGTTGACTACTTTGGGGTGTTGCGAGCTTGGTTATGGCTAAACGTTACCTTAATTATTGGCTATTTTATCGATCTC GCTTTGCAAGAGGCTGGGGTTAAGCTGCCTATGTTCGTCGCCTGCTTATTGGCTGGTATTATCATCGGTAACGTTGGAAG AGCCATCATCAATCGCAGAGAGGTCAAAGATAGAGCCTACTTAGATGATGCGTCACAAGGCTTGTCTCTTATTCAAGATA TCTGCCTAGGTATGTTTCTTACTATGGCTTTGATGAGCCTTAAGATTTGGGAGCTAGAGGGCAGCTTGCTCTATATCTCG GTGGTGATGTCTGTACAGGTATTGTTATCGATAGTCTTTACCATCTTTGTTGTCTTTAGAATGATGGGCAAAGACTATGA GGCGGCGGTGATCTGTTCAGGCTTTGGTGGCGTAACCTTGGGCTCTACCGCAACCGCGATTGTGAATATGACGGCGGTGA CTCAGCAGTATGGTGCGGCGCATAGAGCCTTTATTATTGTACCTCTGGTATGTGGTTTCTTTATCGATATTATCAATGCG ATGATCATCAATTTATTCGTCTATTTTTAA
Upstream 100 bases:
>100_bases AGCGAAGTTTAGGTTATCTGTTGGTATTCGGCAGCAAGAGGGGGGAACCTCTCTTTTCAGCTATTTCTTATTAACCTTCC ACAGGGATTAATCGATTGTC
Downstream 100 bases:
>100_bases GCCTAGTTTTAAGGCTAGTTTTAAGCGTTAGCGTCAGGCTGTGAACCGGGCGAGATCGATAAGCAAGGACTTGATGCAAA GAATTAACCGTTTGATTTGA
Product: sodium/glutamate symporter
Products: Na (I) [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate permease [H]
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MEPQLIEIKDFVSFTLAIIALFIGKSIISRYELLRKYSIPEPVVGGFACAAIVGILYYAFDIQIEFNLEVRDVLLLYFFA GIGLKADFATLLKGGKPLLILIMLASVFIFLQNFTGVTIASLFGLDPKAGLMSGSIALIGGVGTAMAWTPTFVEELGIVN ASELGIASNTLGLISACVIGGPIAAYLMKRHKVQANHDSELDIGTSHQAGSSHIKVDYFGVLRAWLWLNVTLIIGYFIDL ALQEAGVKLPMFVACLLAGIIIGNVGRAIINRREVKDRAYLDDASQGLSLIQDICLGMFLTMALMSLKIWELEGSLLYIS VVMSVQVLLSIVFTIFVVFRMMGKDYEAAVICSGFGGVTLGSTATAIVNMTAVTQQYGAAHRAFIIVPLVCGFFIDIINA MIINLFVYF
Sequences:
>Translated_409_residues MEPQLIEIKDFVSFTLAIIALFIGKSIISRYELLRKYSIPEPVVGGFACAAIVGILYYAFDIQIEFNLEVRDVLLLYFFA GIGLKADFATLLKGGKPLLILIMLASVFIFLQNFTGVTIASLFGLDPKAGLMSGSIALIGGVGTAMAWTPTFVEELGIVN ASELGIASNTLGLISACVIGGPIAAYLMKRHKVQANHDSELDIGTSHQAGSSHIKVDYFGVLRAWLWLNVTLIIGYFIDL ALQEAGVKLPMFVACLLAGIIIGNVGRAIINRREVKDRAYLDDASQGLSLIQDICLGMFLTMALMSLKIWELEGSLLYIS VVMSVQVLLSIVFTIFVVFRMMGKDYEAAVICSGFGGVTLGSTATAIVNMTAVTQQYGAAHRAFIIVPLVCGFFIDIINA MIINLFVYF >Mature_409_residues MEPQLIEIKDFVSFTLAIIALFIGKSIISRYELLRKYSIPEPVVGGFACAAIVGILYYAFDIQIEFNLEVRDVLLLYFFA GIGLKADFATLLKGGKPLLILIMLASVFIFLQNFTGVTIASLFGLDPKAGLMSGSIALIGGVGTAMAWTPTFVEELGIVN ASELGIASNTLGLISACVIGGPIAAYLMKRHKVQANHDSELDIGTSHQAGSSHIKVDYFGVLRAWLWLNVTLIIGYFIDL ALQEAGVKLPMFVACLLAGIIIGNVGRAIINRREVKDRAYLDDASQGLSLIQDICLGMFLTMALMSLKIWELEGSLLYIS VVMSVQVLLSIVFTIFVVFRMMGKDYEAAVICSGFGGVTLGSTATAIVNMTAVTQQYGAAHRAFIIVPLVCGFFIDIINA MIINLFVYF
Specific function: Catalyzes the sodium-dependent uptake of extracellular glutamate [H]
COG id: COG0786
COG function: function code E; Na+/glutamate symporter
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gltS symporter family [H]
Homologues:
Organism=Escherichia coli, GI1790085, Length=384, Percent_Identity=37.2395833333333, Blast_Score=240, Evalue=1e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004445 [H]
Pfam domain/function: PF03616 Glt_symporter [H]
EC number: NA
Molecular weight: Translated: 44333; Mature: 44333
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPQLIEIKDFVSFTLAIIALFIGKSIISRYELLRKYSIPEPVVGGFACAAIVGILYYAF CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHE DIQIEFNLEVRDVLLLYFFAGIGLKADFATLLKGGKPLLILIMLASVFIFLQNFTGVTIA EEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH SLFGLDPKAGLMSGSIALIGGVGTAMAWTPTFVEELGIVNASELGIASNTLGLISACVIG HHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHH GPIAAYLMKRHKVQANHDSELDIGTSHQAGSSHIKVDYFGVLRAWLWLNVTLIIGYFIDL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH ALQEAGVKLPMFVACLLAGIIIGNVGRAIINRREVKDRAYLDDASQGLSLIQDICLGMFL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TMALMSLKIWELEGSLLYISVVMSVQVLLSIVFTIFVVFRMMGKDYEAAVICSGFGGVTL HHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC GSTATAIVNMTAVTQQYGAAHRAFIIVPLVCGFFIDIINAMIINLFVYF CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEPQLIEIKDFVSFTLAIIALFIGKSIISRYELLRKYSIPEPVVGGFACAAIVGILYYAF CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHE DIQIEFNLEVRDVLLLYFFAGIGLKADFATLLKGGKPLLILIMLASVFIFLQNFTGVTIA EEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHH SLFGLDPKAGLMSGSIALIGGVGTAMAWTPTFVEELGIVNASELGIASNTLGLISACVIG HHHCCCCCCCCCCCCEEEEECCCHHHHCCHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHH GPIAAYLMKRHKVQANHDSELDIGTSHQAGSSHIKVDYFGVLRAWLWLNVTLIIGYFIDL HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH ALQEAGVKLPMFVACLLAGIIIGNVGRAIINRREVKDRAYLDDASQGLSLIQDICLGMFL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH TMALMSLKIWELEGSLLYISVVMSVQVLLSIVFTIFVVFRMMGKDYEAAVICSGFGGVTL HHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC GSTATAIVNMTAVTQQYGAAHRAFIIVPLVCGFFIDIINAMIINLFVYF CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Na (I) [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Na (I) [Periplasm] + L-glutamate [Periplasm] = Na (I) [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]