| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624950
Identifier: 167624950
GI number: 167624950
Start: 3704150
End: 3704542
Strand: Reverse
Name: 167624950
Synonym: Shal_3037
Alternate gene names: NA
Gene position: 3704542-3704150 (Counterclockwise)
Preceding gene: 167624951
Following gene: 167624945
Centisome position: 70.87
GC content: 48.35
Gene sequence:
>393_bases ATGGATATCGATGAAAAGATCCGTCAGCAGCTGCTAAAGGAGTCGGAGCAGATAAATAATCAGCTTAAACGCGACCCAAG CTTATTCGCCATGCTAGGCGATGCCTACAAGGGCCGCTTAGGTGGCTGGTTGATATTAATGAGCATTATTGCCTTTCTAT TAAGCTTGTTGATGCTGTGGTCGGGCTACCAGTTCTTTTTTGTTGTGATCAGTCCGGTAGCGCTAATCAAGTGGGGGGTA ACGCTTATGTTGGCAAGCATGATGCAAATTGCGATTAAGATGTGGATCTATAACGAGATGAACCGCAACGCGACCGCCCG CGAGATAAAGCGTTTGGCGCTGGCTATTGCCAAGCTTCACCCGAAGGGAGAGTCGTCATTAGCGCGTGAATAG
Upstream 100 bases:
>100_bases TGTGCTTTTTTAGAGCTAGAGAGCGCTTAAAGCAAACACTAGATTCGCATTAGATTCAGCATTAGAGTAAGCATTAGGGG AAACAGTAGGAGTAGAGATT
Downstream 100 bases:
>100_bases GTTAATTCACGCGTTTTTGGCCTAGCTATTACAGCTTAGCTATGGGGATTATGTTGATTATAAAAGCTCTGCCACGATCT GCTTGAGCAAAAAGGTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MDIDEKIRQQLLKESEQINNQLKRDPSLFAMLGDAYKGRLGGWLILMSIIAFLLSLLMLWSGYQFFFVVISPVALIKWGV TLMLASMMQIAIKMWIYNEMNRNATAREIKRLALAIAKLHPKGESSLARE
Sequences:
>Translated_130_residues MDIDEKIRQQLLKESEQINNQLKRDPSLFAMLGDAYKGRLGGWLILMSIIAFLLSLLMLWSGYQFFFVVISPVALIKWGV TLMLASMMQIAIKMWIYNEMNRNATAREIKRLALAIAKLHPKGESSLARE >Mature_130_residues MDIDEKIRQQLLKESEQINNQLKRDPSLFAMLGDAYKGRLGGWLILMSIIAFLLSLLMLWSGYQFFFVVISPVALIKWGV TLMLASMMQIAIKMWIYNEMNRNATAREIKRLALAIAKLHPKGESSLARE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14917; Mature: 14917
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.9 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.9 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIDEKIRQQLLKESEQINNQLKRDPSLFAMLGDAYKGRLGGWLILMSIIAFLLSLLMLW CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGYQFFFVVISPVALIKWGVTLMLASMMQIAIKMWIYNEMNRNATAREIKRLALAIAKLH CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC PKGESSLARE CCCCCCCCCC >Mature Secondary Structure MDIDEKIRQQLLKESEQINNQLKRDPSLFAMLGDAYKGRLGGWLILMSIIAFLLSLLMLW CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SGYQFFFVVISPVALIKWGVTLMLASMMQIAIKMWIYNEMNRNATAREIKRLALAIAKLH CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC PKGESSLARE CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA