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The map label for this gene is hofB [C]

Identifier: 167624199

GI number: 167624199

Start: 2758452

End: 2759780

Strand: Reverse

Name: hofB [C]

Synonym: Shal_2275

Alternate gene names: 167624199

Gene position: 2759780-2758452 (Counterclockwise)

Preceding gene: 167624200

Following gene: 167624198

Centisome position: 52.8

GC content: 41.91

Gene sequence:

>1329_bases
ATGGAAATTAGAAAAGAAATTAACACAATTAATGATTTCCAGCCATTAACTCAAGATGAGCAGGACATTAAGGTTACCCT
TTACGATAAATTATTGAGCATGATGGATCTCTCTCTTATTGAGACAGTATCAAAAGACCAAGCTCAAGTCCAAATAAGTG
AGATATGTGAACAGATCTTAAATGGGTTAAATTTACCTATTAACCTTTCTACAAGAAAGCGCCTTATAGGTCTTATTATC
GATGAAGTACTTGGATTGGGACCTCTAGAAACTCTCTTATCAGATCCATCAATTTCGGATATTCTCGTAAACTCATATGA
TAGGGTTTATATCGAGCGAAAGGGCAAGCTAGAAGCGGTTAATATCAAGTTTCACAGTAATGCTCACCTTCTAAACATCA
TAGACCGAATCGTCTCTAGTGTTGGTCGGCGAATAGACGAATCATCACCTATGGTCGATGCAAGACTTGCAGATGGATCG
CGTGTGAACGCCATTATACCTCCACTCGCCTTAGACGGTCCTTCCCTTTCGATCAGACGGTTCGCAGTCGATAAACTTAA
CGCCAGACAGCTTATAGATATTGGTTCGGTGACAGAGTCAATGATTGAGCTGCTTAAAGGGAGCGTTAAGGGAAAGCTAA
ATATTTTGGTATCAGGTGGAACGGGTAGTGGTAAAACAACCCTGTTAAATATGCTATCGGGTTTTATTCCTAGTGATGAA
CGAATTGTTACTATTGAGGACTCCGCCGAACTCCAACTACAGCAACCCCATACCGTTAGGTTAGAAACTCGACCACAAAA
TATTGAAGGTAAGGGGGAGGTTTCTCAACGAGATTTGGTTAAAAATTGCTTGAGAATGAGACCGGATAGAATTGTGATTG
GTGAGGTTCGTGGTGGTGAAGCCTTAGATATGCTTACCGCAATGAACACGGGTCATGAGGGCTCATTAACAACCTTACAT
GCTAATAGCCCAAGAGATGCGCTTGGCAGGCTTGAGTATATGGTTTGTATGGCGGGCTTTGACATGCCAGTAAGCAATAT
TCGAACCCAGATTGCATCTGCAATTGATCTAGTGGTGCAGTTAGAGCGCCAAGAAGACGGCCGCAGAAGAGTCACAAGTA
TCCAAGAAATTAATGGCATGGAGGGTGACATTATCACTATGTCTGAAATATTCCGCTTTAGCCGAAAAGGAATAAATGAG
GAGGGGATGATTATCGGAGACTTTGAGGCGACAGGAGTCATACCTGGCTTCCATGCGAAGTTAAAGCAACACGGTATTGA
ACTTCCATATCATCTTTTCAACTGTGGCGATCCATTTGCTGAATTTTAG

Upstream 100 bases:

>100_bases
GTCACCGATGTGCGTTTTTTAGCTGATAAGTTTCTACCCATTAGTAGCGAGCAAGATAAAACTGGAACAACTTTTTGGAA
GCGTCTTTTAGGAAACTAAT

Downstream 100 bases:

>100_bases
GGAGCGTAGACATGTTTTCTAACCAAGTTATCTTCCTAGGACTGGTTTTTGTTGCGGTGCTTTTTTTATCACAAGCCCTG
TTTCTACCAGTCTATAGCCC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MEIRKEINTINDFQPLTQDEQDIKVTLYDKLLSMMDLSLIETVSKDQAQVQISEICEQILNGLNLPINLSTRKRLIGLII
DEVLGLGPLETLLSDPSISDILVNSYDRVYIERKGKLEAVNIKFHSNAHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNARQLIDIGSVTESMIELLKGSVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQIASAIDLVVQLERQEDGRRRVTSIQEINGMEGDIITMSEIFRFSRKGINE
EGMIIGDFEATGVIPGFHAKLKQHGIELPYHLFNCGDPFAEF

Sequences:

>Translated_442_residues
MEIRKEINTINDFQPLTQDEQDIKVTLYDKLLSMMDLSLIETVSKDQAQVQISEICEQILNGLNLPINLSTRKRLIGLII
DEVLGLGPLETLLSDPSISDILVNSYDRVYIERKGKLEAVNIKFHSNAHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNARQLIDIGSVTESMIELLKGSVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQIASAIDLVVQLERQEDGRRRVTSIQEINGMEGDIITMSEIFRFSRKGINE
EGMIIGDFEATGVIPGFHAKLKQHGIELPYHLFNCGDPFAEF
>Mature_442_residues
MEIRKEINTINDFQPLTQDEQDIKVTLYDKLLSMMDLSLIETVSKDQAQVQISEICEQILNGLNLPINLSTRKRLIGLII
DEVLGLGPLETLLSDPSISDILVNSYDRVYIERKGKLEAVNIKFHSNAHLLNIIDRIVSSVGRRIDESSPMVDARLADGS
RVNAIIPPLALDGPSLSIRRFAVDKLNARQLIDIGSVTESMIELLKGSVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGEALDMLTAMNTGHEGSLTTLH
ANSPRDALGRLEYMVCMAGFDMPVSNIRTQIASAIDLVVQLERQEDGRRRVTSIQEINGMEGDIITMSEIFRFSRKGINE
EGMIIGDFEATGVIPGFHAKLKQHGIELPYHLFNCGDPFAEF

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 48978; Mature: 48978

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIRKEINTINDFQPLTQDEQDIKVTLYDKLLSMMDLSLIETVSKDQAQVQISEICEQIL
CCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NGLNLPINLSTRKRLIGLIIDEVLGLGPLETLLSDPSISDILVNSYDRVYIERKGKLEAV
CCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEE
NIKFHSNAHLLNIIDRIVSSVGRRIDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEHH
FAVDKLNARQLIDIGSVTESMIELLKGSVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCC
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGE
EEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
ALDMLTAMNTGHEGSLTTLHANSPRDALGRLEYMVCMAGFDMPVSNIRTQIASAIDLVVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERQEDGRRRVTSIQEINGMEGDIITMSEIFRFSRKGINEEGMIIGDFEATGVIPGFHAK
HHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
LKQHGIELPYHLFNCGDPFAEF
HHHCCCCCCCCEECCCCHHCCC
>Mature Secondary Structure
MEIRKEINTINDFQPLTQDEQDIKVTLYDKLLSMMDLSLIETVSKDQAQVQISEICEQIL
CCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
NGLNLPINLSTRKRLIGLIIDEVLGLGPLETLLSDPSISDILVNSYDRVYIERKGKLEAV
CCCCCCEECCHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHCCCCEEEEEECCCEEEE
NIKFHSNAHLLNIIDRIVSSVGRRIDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
EEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCEEHH
FAVDKLNARQLIDIGSVTESMIELLKGSVKGKLNILVSGGTGSGKTTLLNMLSGFIPSDE
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCC
RIVTIEDSAELQLQQPHTVRLETRPQNIEGKGEVSQRDLVKNCLRMRPDRIVIGEVRGGE
EEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
ALDMLTAMNTGHEGSLTTLHANSPRDALGRLEYMVCMAGFDMPVSNIRTQIASAIDLVVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LERQEDGRRRVTSIQEINGMEGDIITMSEIFRFSRKGINEEGMIIGDFEATGVIPGFHAK
HHHCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHH
LKQHGIELPYHLFNCGDPFAEF
HHHCCCCCCCCEECCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]