| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624200
Identifier: 167624200
GI number: 167624200
Start: 2759782
End: 2761008
Strand: Reverse
Name: 167624200
Synonym: Shal_2276
Alternate gene names: NA
Gene position: 2761008-2759782 (Counterclockwise)
Preceding gene: 167624201
Following gene: 167624199
Centisome position: 52.82
GC content: 38.88
Gene sequence:
>1227_bases ATGGATAAACCGCTTGAGCTATGTGTCTCGAATAATAACCAAGAATCACCTATGTCTTTTTGTCTAGCGTTTCCTGTGCA GGCGATTGTGGCAAGTTGTGGTCATCAGTCGCTTAGTTGGTTAAGTGAAAGCCTAAACCAGTTCGAAAATCTAAAGTGGC AGTCTGCGTCATATGAAGATCAGCATTTAGTAAAAGATAAAAGTAACTTCAACCTCGTGTTATTGGTACTCCCCTCTGAA GAGGTCGAGGCAGAGAAAGCGTTAGCATATGCAGCTAATTTCGATTGCGACATTATATTGGTAGGCCACGATACTCCACA GAATATTTTAAGATTGGCATTTCAATATGATGTCAGTGACTTTATCCCTTCAAGTTCGCAGTCAAATGAACTATTTAGCT CTTTGGAAAAAGTATCTAACCGTCTTGTAAAGAATGCTGATTTGGCACCTGTAGTTGCTATTATAAATGGTAAGGCAGGC TCGGGAGCAAGCTTTCTATCCGCAAGCTTAGCTGATGTCGTCTCTCAAAGAGAAGGCAGCGATCTCGCACTATTAGATAT GGATCTTCACCATGGTACATTGGCACATATTCTTGGGTGCGACGCTAAATACTCGATTTGTGATGTGCTTGGTACGATTG AAGACCTCGATGAGATCGCGCTAAAAAGCACGATGACTAAGAATGGAAACTTGAGCCTTCTCGCGGCAAAACCTTTTGAG CTTCTGACTCTAGACGAAGAGGTTGACTTTAACCGCATTAAAGAACTTATTTGGAAATACCGTCAGTTTTATAAACAGGT TATTTTAGACTTTTCTAGAGGCCCTGAAGATTGGAATTGTGATCTATTATTGAATGCGACGATATTGATCGTTACTCAAC AGAATATAATGCACTTGCGTCAAACCAAAGATTTAATTTTTCAATTGACTAAAAATATGGGTATTGCTTCAGAGCAAATT AACTTGGTTGTTAATCGATATAACAAAAACTCCAATATAAAGTTATCAGATATTAAAGAGGCGTTAGGTATATCAAGTAT AAGTACCGTCATCAACGATTATAAGTTATCAAACGAGTGTGTAGATCTTGGTAAGCCCCTGACTGAAGTTGCAAGGAAAC AAAAGATAGTCACCGATGTGCGTTTTTTAGCTGATAAGTTTCTACCCATTAGTAGCGAGCAAGATAAAACTGGAACAACT TTTTGGAAGCGTCTTTTAGGAAACTAA
Upstream 100 bases:
>100_bases GTAGTTAATTCTTTTTCAATCAATAGGTAAATAATCAAATAGCTTAAGGAATGTTGTCTATAGTAAATATAGCTGTATTA AAAAGGGAGGTAGGTGCGCA
Downstream 100 bases:
>100_bases TATGGAAATTAGAAAAGAAATTAACACAATTAATGATTTCCAGCCATTAACTCAAGATGAGCAGGACATTAAGGTTACCC TTTACGATAAATTATTGAGC
Product: Flp pilus assembly protein ATPase CpaE-like protein
Products: NA
Alternate protein names: Flp Pilus Assembly Protein; Flp Pilus Assembly Protein ATPase CpaE; Response Regulator Receiver Domain-Containing Protein; Pilus Assembly Protein CpaE; Flp Pilus Assembly Response Receiver ATPase CpaE; Flp Pilus Assembly Protein ATPase CpaE-Like; Septum Site-Determining Protein
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MDKPLELCVSNNNQESPMSFCLAFPVQAIVASCGHQSLSWLSESLNQFENLKWQSASYEDQHLVKDKSNFNLVLLVLPSE EVEAEKALAYAANFDCDIILVGHDTPQNILRLAFQYDVSDFIPSSSQSNELFSSLEKVSNRLVKNADLAPVVAIINGKAG SGASFLSASLADVVSQREGSDLALLDMDLHHGTLAHILGCDAKYSICDVLGTIEDLDEIALKSTMTKNGNLSLLAAKPFE LLTLDEEVDFNRIKELIWKYRQFYKQVILDFSRGPEDWNCDLLLNATILIVTQQNIMHLRQTKDLIFQLTKNMGIASEQI NLVVNRYNKNSNIKLSDIKEALGISSISTVINDYKLSNECVDLGKPLTEVARKQKIVTDVRFLADKFLPISSEQDKTGTT FWKRLLGN
Sequences:
>Translated_408_residues MDKPLELCVSNNNQESPMSFCLAFPVQAIVASCGHQSLSWLSESLNQFENLKWQSASYEDQHLVKDKSNFNLVLLVLPSE EVEAEKALAYAANFDCDIILVGHDTPQNILRLAFQYDVSDFIPSSSQSNELFSSLEKVSNRLVKNADLAPVVAIINGKAG SGASFLSASLADVVSQREGSDLALLDMDLHHGTLAHILGCDAKYSICDVLGTIEDLDEIALKSTMTKNGNLSLLAAKPFE LLTLDEEVDFNRIKELIWKYRQFYKQVILDFSRGPEDWNCDLLLNATILIVTQQNIMHLRQTKDLIFQLTKNMGIASEQI NLVVNRYNKNSNIKLSDIKEALGISSISTVINDYKLSNECVDLGKPLTEVARKQKIVTDVRFLADKFLPISSEQDKTGTT FWKRLLGN >Mature_408_residues MDKPLELCVSNNNQESPMSFCLAFPVQAIVASCGHQSLSWLSESLNQFENLKWQSASYEDQHLVKDKSNFNLVLLVLPSE EVEAEKALAYAANFDCDIILVGHDTPQNILRLAFQYDVSDFIPSSSQSNELFSSLEKVSNRLVKNADLAPVVAIINGKAG SGASFLSASLADVVSQREGSDLALLDMDLHHGTLAHILGCDAKYSICDVLGTIEDLDEIALKSTMTKNGNLSLLAAKPFE LLTLDEEVDFNRIKELIWKYRQFYKQVILDFSRGPEDWNCDLLLNATILIVTQQNIMHLRQTKDLIFQLTKNMGIASEQI NLVVNRYNKNSNIKLSDIKEALGISSISTVINDYKLSNECVDLGKPLTEVARKQKIVTDVRFLADKFLPISSEQDKTGTT FWKRLLGN
Specific function: Unknown
COG id: COG4963
COG function: function code U; Flp pilus assembly protein, ATPase CpaE
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45528; Mature: 45528
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPLELCVSNNNQESPMSFCLAFPVQAIVASCGHQSLSWLSESLNQFENLKWQSASYED CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC QHLVKDKSNFNLVLLVLPSEEVEAEKALAYAANFDCDIILVGHDTPQNILRLAFQYDVSD HHHHCCCCCCCEEEEEECCCHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHHHHCHHH FIPSSSQSNELFSSLEKVSNRLVKNADLAPVVAIINGKAGSGASFLSASLADVVSQREGS HCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC DLALLDMDLHHGTLAHILGCDAKYSICDVLGTIEDLDEIALKSTMTKNGNLSLLAAKPFE CEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEE LLTLDEEVDFNRIKELIWKYRQFYKQVILDFSRGPEDWNCDLLLNATILIVTQQNIMHLR EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEECHHHHHHH QTKDLIFQLTKNMGIASEQINLVVNRYNKNSNIKLSDIKEALGISSISTVINDYKLSNEC HHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCEEHHHHHHHHCHHHHHHHHHHHHCCHHH VDLGKPLTEVARKQKIVTDVRFLADKFLPISSEQDKTGTTFWKRLLGN HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MDKPLELCVSNNNQESPMSFCLAFPVQAIVASCGHQSLSWLSESLNQFENLKWQSASYED CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC QHLVKDKSNFNLVLLVLPSEEVEAEKALAYAANFDCDIILVGHDTPQNILRLAFQYDVSD HHHHCCCCCCCEEEEEECCCHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHHHHCHHH FIPSSSQSNELFSSLEKVSNRLVKNADLAPVVAIINGKAGSGASFLSASLADVVSQREGS HCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC DLALLDMDLHHGTLAHILGCDAKYSICDVLGTIEDLDEIALKSTMTKNGNLSLLAAKPFE CEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEE LLTLDEEVDFNRIKELIWKYRQFYKQVILDFSRGPEDWNCDLLLNATILIVTQQNIMHLR EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEEEECHHHHHHH QTKDLIFQLTKNMGIASEQINLVVNRYNKNSNIKLSDIKEALGISSISTVINDYKLSNEC HHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCEEHHHHHHHHCHHHHHHHHHHHHCCHHH VDLGKPLTEVARKQKIVTDVRFLADKFLPISSEQDKTGTTFWKRLLGN HHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA