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The map label for this gene is rarA [H]

Identifier: 167624139

GI number: 167624139

Start: 2678082

End: 2679413

Strand: Reverse

Name: rarA [H]

Synonym: Shal_2215

Alternate gene names: 167624139

Gene position: 2679413-2678082 (Counterclockwise)

Preceding gene: 167624140

Following gene: 167624138

Centisome position: 51.26

GC content: 48.42

Gene sequence:

>1332_bases
GTGTCTAGTTTCAGTTTTGATTTTGCACCAGACTTTAGACCGTTAGCCGCACGAATGCGGCCCGAACGGCTAGAGCAATA
TATTGGCCAGTCACACCTTTTAGGTGAGGGCAAACCGTTACGCCAAGCACTTGAAGCCGGGCGTGCGCACTCCATGATGT
TCTGGGGGCCACCGGGCACAGGTAAAACGACTTTGGCCGAACTTGTTGCGCATTATGCTAATGCCCATGTAGAGCGTATT
TCGGCGGTGACTTCTGGCGTTAAAGAGATCCGGAGTGCAATTGAACATGCCAAGAACGTGGCGCAGTCTCGGGGTCAACG
TACCTTACTGTTTGTTGATGAGGTGCATCGTTTCAATAAGAGCCAGCAGGATGCATTCTTGCCCTTCATTGAAGATGGTA
CGGTAATTTTTATTGGTGCCACGACTGAAAACCCTTCCTTTGAAATCAATAATGCACTGTTGTCGAGGGCGCGTGTTTAT
CTCATTAAGCAACTAGAGCCTGAAGAGATAGGTCAAATTGTTCAGCAAGCGCTTGAGGATGAAGAGAGAGGGCTTGGAAA
ACGTAAGCTACTCTTGCCTGCTGATGTTTCACTAAAGCTGGCACAAACCTGTGATGGTGATGCGCGTAAAGCTTTAAACC
TGATAGAGCTAATGAGCGACATGCTCAAAGACGGCGAAGCCTTTACCGAAGAGATGATCATCGCAGTTGCTGGGCAACAG
TTGGCTGGATTTGATAAAAATGGCGACCAATACTACGATCTGATCTCGGCTGTTCATAAGTCAATTCGTGGCTCAGCCCC
CGATGCGGCACTGTATTGGTTTTGCAGAATGTTAGAAGGCGGCTGTGATCCTCTTTACATTGCACGTCGCCTGTTAGCGA
TAGCGTCTGAAGATATCGGTAATGCAGATCCCATGGCGATGACAGTAGCAATCAATGCATGGGAGTGTTTCCACCGTGTA
GGGCCATCTGAAGGAGAGCGCGCAATTGCACAAGCTGTGTTATATCTTGCCAGTGCTCCTAAAAGTAACGCCGTCTATAC
CGCATTTTCAAAAGCGCGGCAGCTCGCTCGTGAAACTGGCCATGAACCTGTGCCGGAGCATCTACGCAATGCCCCGACCC
AACTGATGAAAGATATCGGTTACGGGGAAGGCTATCGTTATGCTCACGACGAACCCAATGCGTATGCCAGTGGCGAAAAA
TATCTTCCGGAATCGATTGCTGAACATCGTTTTTACTATCCAACGGAGCGTGGATTTGAAAAACGGATCAAAGACAAGCT
TTCTCAACTACAGCAGCTAGATGAGCACAGTGAGGTGAAAAGATATGAATAA

Upstream 100 bases:

>100_bases
TGTGATAGCCGGTAAAGACCAAGATCTGTTTAAGTTCGTCGTACCCGATGATGTAGATATCGACGATCAACGTTTAAAAT
CGACCAATTAAGAGAAGTCA

Downstream 100 bases:

>100_bases
TGTTCTTTTTGTGGCCTTAGGAGGCTCAATTGGCGCTGTTTTACGCTATCTTATCTCATTATTGATGCTTCAGGTATTTG
GTAGTGGATTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSFSFDFAPDFRPLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVAHYANAHVERI
SAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKQLEPEEIGQIVQQALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAVAGQQ
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPLYIARRLLAIASEDIGNADPMAMTVAINAWECFHRV
GPSEGERAIAQAVLYLASAPKSNAVYTAFSKARQLARETGHEPVPEHLRNAPTQLMKDIGYGEGYRYAHDEPNAYASGEK
YLPESIAEHRFYYPTERGFEKRIKDKLSQLQQLDEHSEVKRYE

Sequences:

>Translated_443_residues
MSSFSFDFAPDFRPLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVAHYANAHVERI
SAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKQLEPEEIGQIVQQALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAVAGQQ
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPLYIARRLLAIASEDIGNADPMAMTVAINAWECFHRV
GPSEGERAIAQAVLYLASAPKSNAVYTAFSKARQLARETGHEPVPEHLRNAPTQLMKDIGYGEGYRYAHDEPNAYASGEK
YLPESIAEHRFYYPTERGFEKRIKDKLSQLQQLDEHSEVKRYE
>Mature_442_residues
SSFSFDFAPDFRPLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSMMFWGPPGTGKTTLAELVAHYANAHVERIS
AVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYL
IKQLEPEEIGQIVQQALEDEERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAVAGQQL
AGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPLYIARRLLAIASEDIGNADPMAMTVAINAWECFHRVG
PSEGERAIAQAVLYLASAPKSNAVYTAFSKARQLARETGHEPVPEHLRNAPTQLMKDIGYGEGYRYAHDEPNAYASGEKY
LPESIAEHRFYYPTERGFEKRIKDKLSQLQQLDEHSEVKRYE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=41.6289592760181, Blast_Score=322, Evalue=3e-88,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=37.7828054298643, Blast_Score=270, Evalue=2e-72,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=63.758389261745, Blast_Score=590, Evalue=1e-170,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=37.8190255220418, Blast_Score=292, Evalue=8e-80,
Organism=Saccharomyces cerevisiae, GI6324039, Length=248, Percent_Identity=25, Blast_Score=70, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49524; Mature: 49392

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSFSFDFAPDFRPLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSMMFWGPPGT
CCCCCCCCCCCHHHHHHHCCHHHHHHHHCCHHCCCCCHHHHHHHHCCCCCCEEEECCCCC
GKTTLAELVAHYANAHVERISAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKQLEPEEIGQIVQQALED
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAVAGQQ
HHHCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHH
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPLYIARRLLAIASEDIG
HCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPMAMTVAINAWECFHRVGPSEGERAIAQAVLYLASAPKSNAVYTAFSKARQLARETG
CCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
HEPVPEHLRNAPTQLMKDIGYGEGYRYAHDEPNAYASGEKYLPESIAEHRFYYPTERGFE
CCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHH
KRIKDKLSQLQQLDEHSEVKRYE
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSFSFDFAPDFRPLAARMRPERLEQYIGQSHLLGEGKPLRQALEAGRAHSMMFWGPPGT
CCCCCCCCCCHHHHHHHCCHHHHHHHHCCHHCCCCCHHHHHHHHCCCCCCEEEECCCCC
GKTTLAELVAHYANAHVERISAVTSGVKEIRSAIEHAKNVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKQLEPEEIGQIVQQALED
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
EERGLGKRKLLLPADVSLKLAQTCDGDARKALNLIELMSDMLKDGEAFTEEMIIAVAGQQ
HHHCCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHH
LAGFDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRMLEGGCDPLYIARRLLAIASEDIG
HCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPMAMTVAINAWECFHRVGPSEGERAIAQAVLYLASAPKSNAVYTAFSKARQLARETG
CCCCEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
HEPVPEHLRNAPTQLMKDIGYGEGYRYAHDEPNAYASGEKYLPESIAEHRFYYPTERGFE
CCCCHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHH
KRIKDKLSQLQQLDEHSEVKRYE
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]