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The map label for this gene is ycbZ [H]

Identifier: 167624076

GI number: 167624076

Start: 2594227

End: 2596611

Strand: Reverse

Name: ycbZ [H]

Synonym: Shal_2152

Alternate gene names: 167624076

Gene position: 2596611-2594227 (Counterclockwise)

Preceding gene: 167624077

Following gene: 167624074

Centisome position: 49.68

GC content: 45.32

Gene sequence:

>2385_bases
ATGCCAATAAAACCTCTCAGCAGTACCAAGCTTTATCGCGCATCGACGCTTAACAAGCTCTCATTAGACTGCAAGTCGAC
AAAACACCTCGAACCATTAGACGAAATCGTGGGTCAAGCCCGTGCTCAACAAGCCGTAGAGTTTGCTCTATCGATGAAAG
AGAAAGGCTACAATATTTACGCGCTCGGTCGAAATGGCCTCGGAAAACGCACCATGGTGCTGCGCCATCTGAACCGTCAA
GCACCAAATTCTAACGGCCGCACCTTATACGATTGGTGTTATGTGGTTAATTTTGACGACACTCGTAGTCCAAAAGTCCT
TAAGCTGCCAGCTGGAATGGGCTTGAGCTTTAAAAAGGATATCGAAAAACTCATGTCAAAACTGCTAAAGGCCTTACCTT
TAGCGTTCGACAATGAGATGTACTATAGCCGCGCCGATAAATTAAAAAATCAACTTGCTGCAAAACAGGAAGAAGCCTTG
GTCTTGTTGACCGAAAAGGCTAAGAGTCATTCGGTCGGCCTCTCTGTTTCACCGCAGGGTAACTATGAATTGGTTGCATT
AAATGGTGAAGAGCCTCATACCGAAGAGAGCTACTTAGCACTTTCAGCGAAAGATCAAGATGTGATGCAGGGAGCGATTT
CAGCATTGGAAGCGCAACTTCGCGGTATCGTTAGACAAATAACGGTTTGGGAAGAAGAGTATTCTGAAAAGCAACAAAAG
CATGATGAGCAAGTCGCCGAAGAAGTGCTTTCTCATGCTTTGACTGCGCTAAAAGAGCAATATAAAGATCAAGCAAATGT
TAAAGCCTATATTAAGGCGATGCATAAAGACATCATTGATAATCTGGATATCTTCCTAGAAGAGAGCGAAGAGCAAGCTG
CCCTTGCCTACGCCTCCATGAGTAAGAAGATGCCGAGGCGCTATCAGATCAACGTTCTAGTGTCGCAAGAGTCGCAATTA
CAGCCGATTATTGTCGAGGAAACGCCGAACTACCACACCATTTTTGGCTATGTAGAAAACGCGACTTATAAAGGAACGGT
ATTTACTGACTTCTCGCTGATCCGCCCCGGCAGCTTGCATAAAGCCAATGGCGGCGTTCTCATGATAGACGCAGTAAAAG
TCCTTGAGCACCCTTATGTTTGGGACGGGCTAAAGCGCGCACTGCGTTCACGTAAGTTGAGTTTGACCTCACTGGAACGT
GAAGTGACCCTATCCGGCACAATATCCCTCGACCCTGAGGCTATTCCCTTAGACGTTAAGATCATTTTGTTTGGTGATTT
TGCGACCTATAAGTTATTGCAGCAATATGACGCCGAGTTTACTGAACTGTTTAGGGTTACCGCCGATTTTGAAGATAGAA
TGCCACGTAGCGATGAGTCCGAGGCTCATTACGCTCAGTTTATCTCGAGTATAGTGCACAGTAATAAAATGCTGCACTGC
GATAAGAAAGCGATTGGGCGTGTTATTGAATTTAGCTCTAGACAAGCCGACGATCAAAACATGTTGTCGCTGCACTCCGT
TGATATTGCCAATCTATTACGAGAAGCTAACTATTGTGCGCATGCAGTGAATTCAAACATGATCAGGGTAAGCCATGTAG
AGCAAGCGTTAGCGAATAAAGAGAAACGAATTTGCCGCGCGAAAGATGATTTCATGCAAAGCTTTATTAATGGCACCACC
TTGATTGATACTCATGGAAAGACCGTTGGCCAAGTTAATGGGTTATCGGTGATGTCGACCACAGATTATCAATTTGGTGC
GCCGAGCCGGATCACCGCAACCACCGCTTTTGGTAAAGGACGCGTGTTCGATATAGAACGCAATGTCGAGCTTAGTGGCA
GCATTCACTCTAAAGGCGTGATGATTTTAACCGCGTACATCGCATCCATTTTGGGTAAGACTGATAAAATACCGCTGTCG
ACGCACTTAACCTTTGAGCAGTCCTATGGCGGCGTAGATGGAGACAGTGCAACCATGGCTGAGTTGTGCGCTATGTTATC
TTCATTCTCTGGGCTTGGTCTACGCCAGGATATCGCCATAACGGGGTCGATGAACCAGTTTGGTGAGGCTCAGCCTATTG
GAGGAGTTAACGAGAAGATTGAAGGTTTCTTTGACGTGTGCAAAATTAAGGGCCGTAAAGATACCCAAGGCGTGATTATT
CCCAAGTCGAATATCCATAACTTAATGCTACGACGGGACATTGTTGATGCTGTTGAAAAAGGTAAATTCCACATTTGGGC
GATCAGTCATGTTGATCAAGCAATTCAATTGCTGACGGGTGCTAAAGTGGGGATAGTAAATGACAAAGGAGAATACTCAA
AAGGCAGCGTTCTAGGGCTTGCCCAAGCAAGGCTTAATGAGTTACGTAAAAAAGACACTAAATAG

Upstream 100 bases:

>100_bases
CGCTTTTTGATTAATAATTACCCTAACAGCAAATAATTGCAGAAATATGTTATCTAACTGTATAGAGTAAAATTATTGAC
CGTCATTAAGAGGACGTATT

Downstream 100 bases:

>100_bases
TCACCTTCAGCTAACGCTATCACGCTAGTGAAAATAAAAAAGGCCGAACTAATATTCGGCCTTTTTTATCAATGGTATGT
AAAACGAGTTTGCTAATGCA

Product: putative ATP-dependent protease La-likeprotein

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 794; Mature: 793

Protein sequence:

>794_residues
MPIKPLSSTKLYRASTLNKLSLDCKSTKHLEPLDEIVGQARAQQAVEFALSMKEKGYNIYALGRNGLGKRTMVLRHLNRQ
APNSNGRTLYDWCYVVNFDDTRSPKVLKLPAGMGLSFKKDIEKLMSKLLKALPLAFDNEMYYSRADKLKNQLAAKQEEAL
VLLTEKAKSHSVGLSVSPQGNYELVALNGEEPHTEESYLALSAKDQDVMQGAISALEAQLRGIVRQITVWEEEYSEKQQK
HDEQVAEEVLSHALTALKEQYKDQANVKAYIKAMHKDIIDNLDIFLEESEEQAALAYASMSKKMPRRYQINVLVSQESQL
QPIIVEETPNYHTIFGYVENATYKGTVFTDFSLIRPGSLHKANGGVLMIDAVKVLEHPYVWDGLKRALRSRKLSLTSLER
EVTLSGTISLDPEAIPLDVKIILFGDFATYKLLQQYDAEFTELFRVTADFEDRMPRSDESEAHYAQFISSIVHSNKMLHC
DKKAIGRVIEFSSRQADDQNMLSLHSVDIANLLREANYCAHAVNSNMIRVSHVEQALANKEKRICRAKDDFMQSFINGTT
LIDTHGKTVGQVNGLSVMSTTDYQFGAPSRITATTAFGKGRVFDIERNVELSGSIHSKGVMILTAYIASILGKTDKIPLS
THLTFEQSYGGVDGDSATMAELCAMLSSFSGLGLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRKDTQGVII
PKSNIHNLMLRRDIVDAVEKGKFHIWAISHVDQAIQLLTGAKVGIVNDKGEYSKGSVLGLAQARLNELRKKDTK

Sequences:

>Translated_794_residues
MPIKPLSSTKLYRASTLNKLSLDCKSTKHLEPLDEIVGQARAQQAVEFALSMKEKGYNIYALGRNGLGKRTMVLRHLNRQ
APNSNGRTLYDWCYVVNFDDTRSPKVLKLPAGMGLSFKKDIEKLMSKLLKALPLAFDNEMYYSRADKLKNQLAAKQEEAL
VLLTEKAKSHSVGLSVSPQGNYELVALNGEEPHTEESYLALSAKDQDVMQGAISALEAQLRGIVRQITVWEEEYSEKQQK
HDEQVAEEVLSHALTALKEQYKDQANVKAYIKAMHKDIIDNLDIFLEESEEQAALAYASMSKKMPRRYQINVLVSQESQL
QPIIVEETPNYHTIFGYVENATYKGTVFTDFSLIRPGSLHKANGGVLMIDAVKVLEHPYVWDGLKRALRSRKLSLTSLER
EVTLSGTISLDPEAIPLDVKIILFGDFATYKLLQQYDAEFTELFRVTADFEDRMPRSDESEAHYAQFISSIVHSNKMLHC
DKKAIGRVIEFSSRQADDQNMLSLHSVDIANLLREANYCAHAVNSNMIRVSHVEQALANKEKRICRAKDDFMQSFINGTT
LIDTHGKTVGQVNGLSVMSTTDYQFGAPSRITATTAFGKGRVFDIERNVELSGSIHSKGVMILTAYIASILGKTDKIPLS
THLTFEQSYGGVDGDSATMAELCAMLSSFSGLGLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRKDTQGVII
PKSNIHNLMLRRDIVDAVEKGKFHIWAISHVDQAIQLLTGAKVGIVNDKGEYSKGSVLGLAQARLNELRKKDTK
>Mature_793_residues
PIKPLSSTKLYRASTLNKLSLDCKSTKHLEPLDEIVGQARAQQAVEFALSMKEKGYNIYALGRNGLGKRTMVLRHLNRQA
PNSNGRTLYDWCYVVNFDDTRSPKVLKLPAGMGLSFKKDIEKLMSKLLKALPLAFDNEMYYSRADKLKNQLAAKQEEALV
LLTEKAKSHSVGLSVSPQGNYELVALNGEEPHTEESYLALSAKDQDVMQGAISALEAQLRGIVRQITVWEEEYSEKQQKH
DEQVAEEVLSHALTALKEQYKDQANVKAYIKAMHKDIIDNLDIFLEESEEQAALAYASMSKKMPRRYQINVLVSQESQLQ
PIIVEETPNYHTIFGYVENATYKGTVFTDFSLIRPGSLHKANGGVLMIDAVKVLEHPYVWDGLKRALRSRKLSLTSLERE
VTLSGTISLDPEAIPLDVKIILFGDFATYKLLQQYDAEFTELFRVTADFEDRMPRSDESEAHYAQFISSIVHSNKMLHCD
KKAIGRVIEFSSRQADDQNMLSLHSVDIANLLREANYCAHAVNSNMIRVSHVEQALANKEKRICRAKDDFMQSFINGTTL
IDTHGKTVGQVNGLSVMSTTDYQFGAPSRITATTAFGKGRVFDIERNVELSGSIHSKGVMILTAYIASILGKTDKIPLST
HLTFEQSYGGVDGDSATMAELCAMLSSFSGLGLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRKDTQGVIIP
KSNIHNLMLRRDIVDAVEKGKFHIWAISHVDQAIQLLTGAKVGIVNDKGEYSKGSVLGLAQARLNELRKKDTK

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=412, Percent_Identity=36.8932038834951, Blast_Score=268, Evalue=9e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 88504; Mature: 88373

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIKPLSSTKLYRASTLNKLSLDCKSTKHLEPLDEIVGQARAQQAVEFALSMKEKGYNIY
CCCCCCCCCCEEHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ALGRNGLGKRTMVLRHLNRQAPNSNGRTLYDWCYVVNFDDTRSPKVLKLPAGMGLSFKKD
EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHH
IEKLMSKLLKALPLAFDNEMYYSRADKLKNQLAAKQEEALVLLTEKAKSHSVGLSVSPQG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCC
NYELVALNGEEPHTEESYLALSAKDQDVMQGAISALEAQLRGIVRQITVWEEEYSEKQQK
CEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDEQVAEEVLSHALTALKEQYKDQANVKAYIKAMHKDIIDNLDIFLEESEEQAALAYASM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHEEEECCCHHHHHHHHHH
SKKMPRRYQINVLVSQESQLQPIIVEETPNYHTIFGYVENATYKGTVFTDFSLIRPGSLH
HHCCCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEEEECCEECCEEEECEEEECCCCCE
KANGGVLMIDAVKVLEHPYVWDGLKRALRSRKLSLTSLEREVTLSGTISLDPEAIPLDVK
ECCCCEEEEEEHHHHCCCHHHHHHHHHHHHCCCHHHHHCEEEEEEEEEEECCCCCCEEEE
IILFGDFATYKLLQQYDAEFTELFRVTADFEDRMPRSDESEAHYAQFISSIVHSNKMLHC
EEEECCHHHHHHHHHHCHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEE
DKKAIGRVIEFSSRQADDQNMLSLHSVDIANLLREANYCAHAVNSNMIRVSHVEQALANK
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
EKRICRAKDDFMQSFINGTTLIDTHGKTVGQVNGLSVMSTTDYQFGAPSRITATTAFGKG
HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCC
RVFDIERNVELSGSIHSKGVMILTAYIASILGKTDKIPLSTHLTFEQSYGGVDGDSATMA
EEEEEECCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCHHHH
ELCAMLSSFSGLGLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRKDTQGVII
HHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
PKSNIHNLMLRRDIVDAVEKGKFHIWAISHVDQAIQLLTGAKVGIVNDKGEYSKGSVLGL
ECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEHH
AQARLNELRKKDTK
HHHHHHHHHHCCCC
>Mature Secondary Structure 
PIKPLSSTKLYRASTLNKLSLDCKSTKHLEPLDEIVGQARAQQAVEFALSMKEKGYNIY
CCCCCCCCCEEHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
ALGRNGLGKRTMVLRHLNRQAPNSNGRTLYDWCYVVNFDDTRSPKVLKLPAGMGLSFKKD
EECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCHHHH
IEKLMSKLLKALPLAFDNEMYYSRADKLKNQLAAKQEEALVLLTEKAKSHSVGLSVSPQG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEECCCC
NYELVALNGEEPHTEESYLALSAKDQDVMQGAISALEAQLRGIVRQITVWEEEYSEKQQK
CEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDEQVAEEVLSHALTALKEQYKDQANVKAYIKAMHKDIIDNLDIFLEESEEQAALAYASM
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHEEEECCCHHHHHHHHHH
SKKMPRRYQINVLVSQESQLQPIIVEETPNYHTIFGYVENATYKGTVFTDFSLIRPGSLH
HHCCCCEEEEEEEEECCCCCCCEEEECCCCEEEEEEEEECCEECCEEEECEEEECCCCCE
KANGGVLMIDAVKVLEHPYVWDGLKRALRSRKLSLTSLEREVTLSGTISLDPEAIPLDVK
ECCCCEEEEEEHHHHCCCHHHHHHHHHHHHCCCHHHHHCEEEEEEEEEEECCCCCCEEEE
IILFGDFATYKLLQQYDAEFTELFRVTADFEDRMPRSDESEAHYAQFISSIVHSNKMLHC
EEEECCHHHHHHHHHHCHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEE
DKKAIGRVIEFSSRQADDQNMLSLHSVDIANLLREANYCAHAVNSNMIRVSHVEQALANK
CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
EKRICRAKDDFMQSFINGTTLIDTHGKTVGQVNGLSVMSTTDYQFGAPSRITATTAFGKG
HHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCC
RVFDIERNVELSGSIHSKGVMILTAYIASILGKTDKIPLSTHLTFEQSYGGVDGDSATMA
EEEEEECCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCCCCCCHHHH
ELCAMLSSFSGLGLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRKDTQGVII
HHHHHHHHCCCCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEE
PKSNIHNLMLRRDIVDAVEKGKFHIWAISHVDQAIQLLTGAKVGIVNDKGEYSKGSVLGL
ECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEHH
AQARLNELRKKDTK
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]