BacMap

Definition	Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession	NC_010334
Length	5,226,917

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The map label for this gene is echA8 [H]

Identifier: 167624032

GI number: 167624032

Start: 2540576

End: 2541358

Strand: Reverse

Name: echA8 [H]

Synonym: Shal_2108

Alternate gene names: 167624032

Gene position: 2541358-2540576 (Counterclockwise)

Preceding gene: 167624041

Following gene: 167624024

Centisome position: 48.62

GC content: 47.77

Gene sequence:

>783_bases
TTGGATAAGCAACAAGAAACAGTGCTACTAGAAAGGCCGGAGGAAGGCGTAGCACTATTGACACTTAATCGACCTGCTGC
GACGAATGCGTTAAGTCTTGAGCTACAGCAGTGTTTGTCTGATCACTTTAGTTCATTGTCTAATGATAATACTGTCCGCT
GTATCGTACTGACCGGTGGTGATAACGTTTTTGCTGCAGGTGGTGATATAACCAGTCTTATTGAAGCCAGTCCAATTGAT
ATATACCAACGGCATACCGAAAGATTATGGGCGCCAATTGAGCAATGCCCAAAGCCTGTTATTGCAGCGGTTTGTGGCTA
TGCCTATGGTGGTGGCTGCGAACTGGCGATGTTAGCTGACATTATCGTGGCGGGCGAAAGTGCGGCGTTTTGCCAACCTG
AAATCGCTATTGGGATCATGCCCGGGATAGGTGGGACCCAGCGATTAGTGCGTGCGATAGGTAAAGCAAAAGCTATGCAA
ATGGCGCTAACTGGACGCCCTATTACTGCGCAAGAAGCATTTACAGCCGGGTTAGTCAGTGAGGTGTGCTCCGATAATAA
TGTTTTAGAACAAGCCTTAAGCAATGCTAGACGTATCGCTCGTATGCCTCCTTTAGCTGCTGAACAAATAAAGGAAGTCA
TACTTGCTGGTATGGACGCATCACTCCCCGCTGCCATGGCTCTTGAGCGCAAGGCCAATGCGTTACTGTTTGCCTCTCAA
GATCAACGCGAAGGGATGGTGGCTTTTCTTGAAAAAAGACGAGCGATATTTACCGGGCAATAA

Upstream 100 bases:

>100_bases
GTGGCTATCAATATAAATCCACATCAATTTGTGGCTATTTTTTAACCGTCGCTTCGGTTAAAAAATATTGCTGTACGACA
CCGTATTGAGGAGATTCAAG

Downstream 100 bases:

>100_bases
TGTCGTAACGGCGCTTATAAAGAACGCCGTTATGTGCAACTGAACGAATATGAGTCATTAGCTCAAACATATTACTCTTC
ATTAGTGTGCTCTGTTGTTT

Product: enoyl-CoA hydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MDKQQETVLLERPEEGVALLTLNRPAATNALSLELQQCLSDHFSSLSNDNTVRCIVLTGGDNVFAAGGDITSLIEASPID
IYQRHTERLWAPIEQCPKPVIAAVCGYAYGGGCELAMLADIIVAGESAAFCQPEIAIGIMPGIGGTQRLVRAIGKAKAMQ
MALTGRPITAQEAFTAGLVSEVCSDNNVLEQALSNARRIARMPPLAAEQIKEVILAGMDASLPAAMALERKANALLFASQ
DQREGMVAFLEKRRAIFTGQ

Sequences:

>Translated_260_residues
MDKQQETVLLERPEEGVALLTLNRPAATNALSLELQQCLSDHFSSLSNDNTVRCIVLTGGDNVFAAGGDITSLIEASPID
IYQRHTERLWAPIEQCPKPVIAAVCGYAYGGGCELAMLADIIVAGESAAFCQPEIAIGIMPGIGGTQRLVRAIGKAKAMQ
MALTGRPITAQEAFTAGLVSEVCSDNNVLEQALSNARRIARMPPLAAEQIKEVILAGMDASLPAAMALERKANALLFASQ
DQREGMVAFLEKRRAIFTGQ
>Mature_260_residues
MDKQQETVLLERPEEGVALLTLNRPAATNALSLELQQCLSDHFSSLSNDNTVRCIVLTGGDNVFAAGGDITSLIEASPID
IYQRHTERLWAPIEQCPKPVIAAVCGYAYGGGCELAMLADIIVAGESAAFCQPEIAIGIMPGIGGTQRLVRAIGKAKAMQ
MALTGRPITAQEAFTAGLVSEVCSDNNVLEQALSNARRIARMPPLAAEQIKEVILAGMDASLPAAMALERKANALLFASQ
DQREGMVAFLEKRRAIFTGQ

Specific function: Could possibly oxidize fatty acids using specific components [H]

COG id: COG1024

COG function: function code I; Enoyl-CoA hydratase/carnithine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]

Homologues:

Organism=Homo sapiens, GI194097323, Length=244, Percent_Identity=48.3606557377049, Blast_Score=218, Evalue=6e-57,
Organism=Homo sapiens, GI31542718, Length=252, Percent_Identity=29.3650793650794, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI70995211, Length=268, Percent_Identity=30.5970149253731, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI4502327, Length=258, Percent_Identity=34.1085271317829, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI260274832, Length=249, Percent_Identity=27.710843373494, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI45643119, Length=249, Percent_Identity=27.710843373494, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI260275230, Length=249, Percent_Identity=27.710843373494, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI68989263, Length=192, Percent_Identity=32.2916666666667, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI150378541, Length=253, Percent_Identity=30.4347826086957, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI37594469, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI37594471, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI20127408, Length=173, Percent_Identity=32.9479768786127, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI213417737, Length=235, Percent_Identity=26.8085106382979, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI157694516, Length=235, Percent_Identity=26.8085106382979, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI221136756, Length=253, Percent_Identity=25.6916996047431, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI221136753, Length=253, Percent_Identity=25.6916996047431, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI221307494, Length=250, Percent_Identity=26, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI25453481, Length=256, Percent_Identity=23.828125, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI51538573, Length=256, Percent_Identity=23.828125, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4757968, Length=258, Percent_Identity=24.031007751938, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI49355787, Length=258, Percent_Identity=24.031007751938, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI62530384, Length=249, Percent_Identity=26.5060240963855, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4757966, Length=232, Percent_Identity=24.5689655172414, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI51538581, Length=232, Percent_Identity=24.5689655172414, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI116235487, Length=250, Percent_Identity=24.8, Blast_Score=68, Evalue=8e-12,
Organism=Escherichia coli, GI1787659, Length=247, Percent_Identity=45.3441295546559, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787660, Length=259, Percent_Identity=35.5212355212355, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI221142681, Length=252, Percent_Identity=33.7301587301587, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI87082183, Length=254, Percent_Identity=31.8897637795276, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788597, Length=262, Percent_Identity=29.0076335877863, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1790281, Length=223, Percent_Identity=28.6995515695067, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1788682, Length=211, Percent_Identity=32.2274881516588, Blast_Score=89, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17554946, Length=254, Percent_Identity=42.1259842519685, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI25145438, Length=244, Percent_Identity=43.0327868852459, Blast_Score=194, Evalue=3e-50,
Organism=Caenorhabditis elegans, GI17540714, Length=238, Percent_Identity=32.3529411764706, Blast_Score=116, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17536985, Length=269, Percent_Identity=27.1375464684015, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17560910, Length=246, Percent_Identity=30.4878048780488, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17549921, Length=208, Percent_Identity=29.8076923076923, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI25144157, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI25144160, Length=194, Percent_Identity=30.4123711340206, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17558304, Length=173, Percent_Identity=32.9479768786127, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17534483, Length=251, Percent_Identity=24.7011952191235, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17540306, Length=261, Percent_Identity=29.8850574712644, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25144276, Length=173, Percent_Identity=31.7919075144509, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508951, Length=173, Percent_Identity=31.7919075144509, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508953, Length=173, Percent_Identity=31.7919075144509, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17535521, Length=211, Percent_Identity=25.5924170616114, Blast_Score=71, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6320241, Length=219, Percent_Identity=25.5707762557078, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI20129971, Length=261, Percent_Identity=42.911877394636, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24653477, Length=261, Percent_Identity=42.911877394636, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI24653139, Length=263, Percent_Identity=33.4600760456274, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI19920382, Length=236, Percent_Identity=32.6271186440678, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI19922422, Length=255, Percent_Identity=27.0588235294118, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI28571729, Length=208, Percent_Identity=30.2884615384615, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28571730, Length=208, Percent_Identity=30.2884615384615, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357171, Length=245, Percent_Identity=29.3877551020408, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24650670, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24654903, Length=214, Percent_Identity=24.2990654205607, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19921018, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001753
- InterPro:   IPR018376 [H]

Pfam domain/function: PF00378 ECH [H]

EC number: =4.2.1.17 [H]

Molecular weight: Translated: 27711; Mature: 27711

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQQETVLLERPEEGVALLTLNRPAATNALSLELQQCLSDHFSSLSNDNTVRCIVLTGG
CCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
DNVFAAGGDITSLIEASPIDIYQRHTERLWAPIEQCPKPVIAAVCGYAYGGGCELAMLAD
CEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
IIVAGESAAFCQPEIAIGIMPGIGGTQRLVRAIGKAKAMQMALTGRPITAQEAFTAGLVS
HHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EVCSDNNVLEQALSNARRIARMPPLAAEQIKEVILAGMDASLPAAMALERKANALLFASQ
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECC
DQREGMVAFLEKRRAIFTGQ
CCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDKQQETVLLERPEEGVALLTLNRPAATNALSLELQQCLSDHFSSLSNDNTVRCIVLTGG
CCCCCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
DNVFAAGGDITSLIEASPIDIYQRHTERLWAPIEQCPKPVIAAVCGYAYGGGCELAMLAD
CEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH
IIVAGESAAFCQPEIAIGIMPGIGGTQRLVRAIGKAKAMQMALTGRPITAQEAFTAGLVS
HHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
EVCSDNNVLEQALSNARRIARMPPLAAEQIKEVILAGMDASLPAAMALERKANALLFASQ
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEECC
DQREGMVAFLEKRRAIFTGQ
CCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]