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The map label for this gene is 167624024

Identifier: 167624024

GI number: 167624024

Start: 2531346

End: 2532365

Strand: Reverse

Name: 167624024

Synonym: Shal_2100

Alternate gene names: NA

Gene position: 2532365-2531346 (Counterclockwise)

Preceding gene: 167624032

Following gene: 167624023

Centisome position: 48.45

GC content: 41.47

Gene sequence:

>1020_bases
ATGCATATATTTTTTACTATCTCTATTTCACTCATTGTCGCTACAGCAGGTTTAATTGCTTTTTCAGCAAGAGAATCTGC
ACCTCTATCAGCTAACGACATTCCTGTCACTAACATGAACATCACGAATATAGAAGTCACTTCGGCAGGGCTTGTCGCAA
GTGGAGAACTAGGTTCGCTTTTATTGTCTACCGATGAAGGCAAAACATGGCAGCCTACTAACGTGACCAAGCAGCGGCAT
GCACTTATCACGAGGATGGTTTTTGATTCACCAGATACTGGTCTTGCAATAGGACATGAAGGTTGGATATTAAAAACCAC
CGATGGCGGCTTGTCTTGGCGAGAGGTCGCATTCGATAAAACGATGAGTGATCCCCTGTTTAACATTGCTAAATTAGATT
CAGGCCAATGGCTTACGGTGGGAGCTTTTGGCAAGTCTATGGTGTCATATGATGATGGGGAAAGTTGGCAAAAAATATCT
GCTCCAGAAGGAACCGATTGGCATCTAAATGGCTTAATGAGCGACGATAACAAACAAAATTGGTTAATGGTTGGCGAAGC
CGGAACCGTACTGCGCTCAAACGACTACGGCGAAAATTGGCATTCTTTACCAACTTTTTACGATGGTTCTTTGTATGGAG
GTCTGCACTTAGGCGGAAGTAAATGGCTGGTATATGGTATGAGAGGCAATATATTTCGCACGGTAGACAATGGCAATAAT
TGGCATAAAGTCGATTTTCCTTACCCTATTTCTCTATTTACTCATTTAACACTATCGTCCGGAGAACTACTTCTTGCTGG
CCAAGGTGGCATTGTTTTATCTAGTGTTGATCAAGGTGAGACATTTAGCATATTCCGCAGCGGAGGACGTCTATCTGTAA
CTGATATGGCGGTTTTACCTTCCGGCAATATCATTTTAGCTAGTGACTCAGGCATTTTTTATCACTCTTTAAAACAACAA
AAAACGGCTAAAACAGAAACCAGAAAAATCGTAAAACCAAATACTAATTCGAATACATAA

Upstream 100 bases:

>100_bases
TGTCAGGCAGCGCCAAAATATACGTCTTTAAGGTTAACTTGATTTAAATAACAGCAGTTTATTAACTGACTGCTTTAGGG
AAGTTCCTATCGGGAGAGTT

Downstream 100 bases:

>100_bases
CCGGCACCCCTTGGAGTTTTCTATGTCGCAACCTCAATCAATTCCCACTCAACCAAGGCAGAAAGATATTAGTTTAGTTA
AACGTTTTGTAGACTTTACC

Product: glycosyl hydrolase

Products: NA

Alternate protein names: BNR/Asp-Box Repeat-Containing Protein; BNR Domain-Containing Protein; BNR Repeat-Containing Protein; Glycosyl Hydrolase; Glycosyl Hydrolase BNR Repeat; BNR/Asp-Box Repeat Domain Protein; Glycosyl Hydrolase BNR Repeat Protein; BNR/Asp-Box Repeat Protein; Plant Photosystem II Stability/Assembly Factor Protein; Glycosyl Hydrolase BNR Repeat-Containing Glycosyl Hydrolase; BNR Repeat Protein; Glycosyl Hydrolase BNR Protein; Protein Related Photosystem II Stability/Assembly Factor; Oxidoreductase

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MHIFFTISISLIVATAGLIAFSARESAPLSANDIPVTNMNITNIEVTSAGLVASGELGSLLLSTDEGKTWQPTNVTKQRH
ALITRMVFDSPDTGLAIGHEGWILKTTDGGLSWREVAFDKTMSDPLFNIAKLDSGQWLTVGAFGKSMVSYDDGESWQKIS
APEGTDWHLNGLMSDDNKQNWLMVGEAGTVLRSNDYGENWHSLPTFYDGSLYGGLHLGGSKWLVYGMRGNIFRTVDNGNN
WHKVDFPYPISLFTHLTLSSGELLLAGQGGIVLSSVDQGETFSIFRSGGRLSVTDMAVLPSGNIILASDSGIFYHSLKQQ
KTAKTETRKIVKPNTNSNT

Sequences:

>Translated_339_residues
MHIFFTISISLIVATAGLIAFSARESAPLSANDIPVTNMNITNIEVTSAGLVASGELGSLLLSTDEGKTWQPTNVTKQRH
ALITRMVFDSPDTGLAIGHEGWILKTTDGGLSWREVAFDKTMSDPLFNIAKLDSGQWLTVGAFGKSMVSYDDGESWQKIS
APEGTDWHLNGLMSDDNKQNWLMVGEAGTVLRSNDYGENWHSLPTFYDGSLYGGLHLGGSKWLVYGMRGNIFRTVDNGNN
WHKVDFPYPISLFTHLTLSSGELLLAGQGGIVLSSVDQGETFSIFRSGGRLSVTDMAVLPSGNIILASDSGIFYHSLKQQ
KTAKTETRKIVKPNTNSNT
>Mature_339_residues
MHIFFTISISLIVATAGLIAFSARESAPLSANDIPVTNMNITNIEVTSAGLVASGELGSLLLSTDEGKTWQPTNVTKQRH
ALITRMVFDSPDTGLAIGHEGWILKTTDGGLSWREVAFDKTMSDPLFNIAKLDSGQWLTVGAFGKSMVSYDDGESWQKIS
APEGTDWHLNGLMSDDNKQNWLMVGEAGTVLRSNDYGENWHSLPTFYDGSLYGGLHLGGSKWLVYGMRGNIFRTVDNGNN
WHKVDFPYPISLFTHLTLSSGELLLAGQGGIVLSSVDQGETFSIFRSGGRLSVTDMAVLPSGNIILASDSGIFYHSLKQQ
KTAKTETRKIVKPNTNSNT

Specific function: Unknown

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36856; Mature: 36856

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIFFTISISLIVATAGLIAFSARESAPLSANDIPVTNMNITNIEVTSAGLVASGELGSL
CEEEEEEEEEEEHHHHHHEEEECCCCCCCCCCCCEEECEEEEEEEEECCCEEECCCCCEE
LLSTDEGKTWQPTNVTKQRHALITRMVFDSPDTGLAIGHEGWILKTTDGGLSWREVAFDK
EEECCCCCCCCCCCCCHHHHHHEEHHEECCCCCCEEECCCCCEEEECCCCCCCHHEECCC
TMSDPLFNIAKLDSGQWLTVGAFGKSMVSYDDGESWQKISAPEGTDWHLNGLMSDDNKQN
CCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCCEEECCCCCCCEEEEEEECCCCCCC
WLMVGEAGTVLRSNDYGENWHSLPTFYDGSLYGGLHLGGSKWLVYGMRGNIFRTVDNGNN
EEEEECCCCEEECCCCCCCCCCCCCEECCCEEEEEEECCCEEEEEECCCCEEEEECCCCC
WHKVDFPYPISLFTHLTLSSGELLLAGQGGIVLSSVDQGETFSIFRSGGRLSVTDMAVLP
EEEECCCCCEEEEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEECCCEEEEEEEEEEC
SGNIILASDSGIFYHSLKQQKTAKTETRKIVKPNTNSNT
CCCEEEEECCCEEEEHHHHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure
MHIFFTISISLIVATAGLIAFSARESAPLSANDIPVTNMNITNIEVTSAGLVASGELGSL
CEEEEEEEEEEEHHHHHHEEEECCCCCCCCCCCCEEECEEEEEEEEECCCEEECCCCCEE
LLSTDEGKTWQPTNVTKQRHALITRMVFDSPDTGLAIGHEGWILKTTDGGLSWREVAFDK
EEECCCCCCCCCCCCCHHHHHHEEHHEECCCCCCEEECCCCCEEEECCCCCCCHHEECCC
TMSDPLFNIAKLDSGQWLTVGAFGKSMVSYDDGESWQKISAPEGTDWHLNGLMSDDNKQN
CCCCCCEEEEEECCCCEEEEECCCCCEECCCCCCCCEEECCCCCCCEEEEEEECCCCCCC
WLMVGEAGTVLRSNDYGENWHSLPTFYDGSLYGGLHLGGSKWLVYGMRGNIFRTVDNGNN
EEEEECCCCEEECCCCCCCCCCCCCEECCCEEEEEEECCCEEEEEECCCCEEEEECCCCC
WHKVDFPYPISLFTHLTLSSGELLLAGQGGIVLSSVDQGETFSIFRSGGRLSVTDMAVLP
EEEECCCCCEEEEEEEEECCCCEEEEECCCEEEEECCCCCEEEEEECCCEEEEEEEEEEC
SGNIILASDSGIFYHSLKQQKTAKTETRKIVKPNTNSNT
CCCEEEEECCCEEEEHHHHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA