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The map label for this gene is ydhB [H]

Identifier: 167624008

GI number: 167624008

Start: 2508504

End: 2509406

Strand: Reverse

Name: ydhB [H]

Synonym: Shal_2084

Alternate gene names: 167624008

Gene position: 2509406-2508504 (Counterclockwise)

Preceding gene: 167624010

Following gene: 167624007

Centisome position: 48.01

GC content: 44.41

Gene sequence:

>903_bases
ATGCTTTCAGAACAATCCCTTCAACTCATCGATATGGTCGCCCGTGTCGGTAGCTTTACCGCTGCAGCTAACAAACTGCA
CAAAGTGCCTTCAGCCGTAAGTTATGCGGTCAAACAGCTTGAAGAAGAGCTTGGCGTGGTTTTATTTATTAGACATCATA
GAAGTGTCAGCTTAACTCCGGCAGGCGAGCACTTCGTCAAACAGTCTCGGAGCCTGTTAACAGACATAGATGCAATGCGG
GCTGATACCATTCGCGTAGCTAATGGCTGGCAGCCTACACTTTCAATTGCACTCGACAATATCGTTAGAGCCGATAAGAT
CAGTAATTTAATCGCCGACTTCTATCGAACTTTCGATAATGTTGAGTTGATTATCCGCATCGAAGTGTTTAATGGTGTTT
GGGAGTCAATAGCAACAGGACGAAGTGATATTGCTATTGGCGCAACAACTGCAATACCTGTCGGCGGGGACTTTCATTTT
AGGGACATGGGTAAGATTGAATGGAATTTTCTTGTAGGCAAAAATCATCCTCTGGCCGATATTGATAGACCCATAACCGA
TGATGAATTGCGACAATACCCTTCTATATGCCTTGAAGACACCTCTCGCGAGATCCCTAAAAGAATGACCTGGTTACTTG
AAAACCAAAGGCGTCTTGTTGTCCCAGATTGGATCCGCGCGATTAACTGTTTTAGAGAAGGCCTAGGTATTGGATACATG
CCGGCTCATTTTGCATTTCCGTTTATTAAAACTGGGGCACTGATTGAGAAAGAGCTTGAGCGACCTAATCTGACCAGTCC
GTGTTGCTTAGCTTGGAACGCGACCAATCAATCACCCGCTATGGCTTGGGTACTGAACTATTTAGGTGATAGTGAAAAAT
TACATAAAGACTGGCTTGATTAA

Upstream 100 bases:

>100_bases
GGATTTATTAAAGTCGCGCAGTTTAAACACTTGCTAAACTACTGTGAAACGTTTATTTTTCACATTAGCTATCAAAAAAA
CTCACAGCAGGATGTGGCCT

Downstream 100 bases:

>100_bases
CTAAGCTTAACTTAACGCTATTTTATGCGCTAAGCGCTTTATACCTTGAGTTGGCTACTGTATGATTCAATGAGCTAACG
AGCGATTAAAACTCATTTTG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQLEEELGVVLFIRHHRSVSLTPAGEHFVKQSRSLLTDIDAMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDFHF
RDMGKIEWNFLVGKNHPLADIDRPITDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIGYM
PAHFAFPFIKTGALIEKELERPNLTSPCCLAWNATNQSPAMAWVLNYLGDSEKLHKDWLD

Sequences:

>Translated_300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQLEEELGVVLFIRHHRSVSLTPAGEHFVKQSRSLLTDIDAMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDFHF
RDMGKIEWNFLVGKNHPLADIDRPITDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIGYM
PAHFAFPFIKTGALIEKELERPNLTSPCCLAWNATNQSPAMAWVLNYLGDSEKLHKDWLD
>Mature_300_residues
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQLEEELGVVLFIRHHRSVSLTPAGEHFVKQSRSLLTDIDAMR
ADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDNVELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDFHF
RDMGKIEWNFLVGKNHPLADIDRPITDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIGYM
PAHFAFPFIKTGALIEKELERPNLTSPCCLAWNATNQSPAMAWVLNYLGDSEKLHKDWLD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=54.180602006689, Blast_Score=346, Evalue=8e-97,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=31.5789473684211, Blast_Score=178, Evalue=3e-46,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=31.8681318681319, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=31.0469314079422, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1789492, Length=295, Percent_Identity=31.5254237288136, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787806, Length=142, Percent_Identity=30.9859154929577, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790262, Length=191, Percent_Identity=26.1780104712042, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI157672245, Length=167, Percent_Identity=31.1377245508982, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=202, Percent_Identity=26.2376237623762, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33887; Mature: 33887

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQLEEELGVVLFIRHHRSVSLTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCC
AGEHFVKQSRSLLTDIDAMRADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDN
CHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDFHFRDMGKIEWNFLVGKNHPLAD
EEEEEEEEEHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
IDRPITDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIGYM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
PAHFAFPFIKTGALIEKELERPNLTSPCCLAWNATNQSPAMAWVLNYLGDSEKLHKDWLD
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MLSEQSLQLIDMVARVGSFTAAANKLHKVPSAVSYAVKQLEEELGVVLFIRHHRSVSLTP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCC
AGEHFVKQSRSLLTDIDAMRADTIRVANGWQPTLSIALDNIVRADKISNLIADFYRTFDN
CHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VELIIRIEVFNGVWESIATGRSDIAIGATTAIPVGGDFHFRDMGKIEWNFLVGKNHPLAD
EEEEEEEEEHHHHHHHHHCCCCCEEEECCEEEECCCCCCCCCCCCEEEEEEECCCCCHHH
IDRPITDDELRQYPSICLEDTSREIPKRMTWLLENQRRLVVPDWIRAINCFREGLGIGYM
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC
PAHFAFPFIKTGALIEKELERPNLTSPCCLAWNATNQSPAMAWVLNYLGDSEKLHKDWLD
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]