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The map label for this gene is yccA [C]

Identifier: 167624007

GI number: 167624007

Start: 2507670

End: 2508332

Strand: Reverse

Name: yccA [C]

Synonym: Shal_2083

Alternate gene names: 167624007

Gene position: 2508332-2507670 (Counterclockwise)

Preceding gene: 167624008

Following gene: 167624006

Centisome position: 47.99

GC content: 44.49

Gene sequence:

>663_bases
ATGAAAGATATGACACAACAAACCGCGTATAGCAGTACTTCAGTTGAAGTAAACAAACTGCTTAAAAATACGTACATGCT
GCTTTCTATGACCCTAGCGTTTTCTGCAGTGTGCGCAGGTTTGGCGATGGCATTAGCAATTAGCCCTATGATGTCTCTAG
GCCTATCTATTGGTAGCTTAGTCCTTTTATTTGTGACACTAAGAAAAGCGGACTCTAGTGCCGGTCTTTTTTGGGTATTC
GCGTTCACAGGTATGCAAGGTGCGTCGTTAGGCTACATCCTTAACCATTATGCTGGTATGGCAAATGGTCCACAGCTGAT
CATGCAAGCATTAGGGTTAACCTCGGTAATCTTCATTACGCTTTCAGGTTATGCGGTAACGACCAAGAAAGACTTCTCCT
TCATGCGTGGTTTCCTGATCGCAGGTCTTGTGATCATGGTTGTGGGTCTGTTGGTTAACATGTTCCTTGGTAACGGCATG
GTTTTCATGGCGCTTAATGCCGGTATCGCGCTGTTGATGACTGGTTTCATCCTTTACGACACGAGTCGTATTGTGAGTGG
TGGTGAGACGAACTATATCCGTGCAACCATCTCTTTATACCTAGATTTCTTGAACCTATTCATCGCCCTACTGCATTTAA
TGGGCATCGGTAACGATGACTAA

Upstream 100 bases:

>100_bases
GAGCTAACGAGCGATTAAAACTCATTTTGACGATGGGGGAACTCCTTGTTTATCTCATGTTCAAATAGATTGGCTTGAAA
ATTTGTCTTCGGAGAAAGAT

Downstream 100 bases:

>100_bases
TACCAATTAAATTTAATTGAGTTAAAATGGTCCTATTACAGGGCCATTTTTTTTACCATGAGCAAATTTATTATTCAGGT
TAACTCTCCAGCTTACGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MKDMTQQTAYSSTSVEVNKLLKNTYMLLSMTLAFSAVCAGLAMALAISPMMSLGLSIGSLVLLFVTLRKADSSAGLFWVF
AFTGMQGASLGYILNHYAGMANGPQLIMQALGLTSVIFITLSGYAVTTKKDFSFMRGFLIAGLVIMVVGLLVNMFLGNGM
VFMALNAGIALLMTGFILYDTSRIVSGGETNYIRATISLYLDFLNLFIALLHLMGIGNDD

Sequences:

>Translated_220_residues
MKDMTQQTAYSSTSVEVNKLLKNTYMLLSMTLAFSAVCAGLAMALAISPMMSLGLSIGSLVLLFVTLRKADSSAGLFWVF
AFTGMQGASLGYILNHYAGMANGPQLIMQALGLTSVIFITLSGYAVTTKKDFSFMRGFLIAGLVIMVVGLLVNMFLGNGM
VFMALNAGIALLMTGFILYDTSRIVSGGETNYIRATISLYLDFLNLFIALLHLMGIGNDD
>Mature_220_residues
MKDMTQQTAYSSTSVEVNKLLKNTYMLLSMTLAFSAVCAGLAMALAISPMMSLGLSIGSLVLLFVTLRKADSSAGLFWVF
AFTGMQGASLGYILNHYAGMANGPQLIMQALGLTSVIFITLSGYAVTTKKDFSFMRGFLIAGLVIMVVGLLVNMFLGNGM
VFMALNAGIALLMTGFILYDTSRIVSGGETNYIRATISLYLDFLNLFIALLHLMGIGNDD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Homo sapiens, GI116812579, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787205, Length=222, Percent_Identity=42.7927927927928, Blast_Score=157, Evalue=6e-40,
Organism=Drosophila melanogaster, GI45551091, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647735, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653225, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653221, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653223, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24653227, Length=145, Percent_Identity=31.0344827586207, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23603; Mature: 23603

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDMTQQTAYSSTSVEVNKLLKNTYMLLSMTLAFSAVCAGLAMALAISPMMSLGLSIGSL
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLFVTLRKADSSAGLFWVFAFTGMQGASLGYILNHYAGMANGPQLIMQALGLTSVIFIT
HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHE
LSGYAVTTKKDFSFMRGFLIAGLVIMVVGLLVNMFLGNGMVFMALNAGIALLMTGFILYD
ECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHH
TSRIVSGGETNYIRATISLYLDFLNLFIALLHLMGIGNDD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKDMTQQTAYSSTSVEVNKLLKNTYMLLSMTLAFSAVCAGLAMALAISPMMSLGLSIGSL
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLFVTLRKADSSAGLFWVFAFTGMQGASLGYILNHYAGMANGPQLIMQALGLTSVIFIT
HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHE
LSGYAVTTKKDFSFMRGFLIAGLVIMVVGLLVNMFLGNGMVFMALNAGIALLMTGFILYD
ECCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHCCHHHHHHHHHHHH
TSRIVSGGETNYIRATISLYLDFLNLFIALLHLMGIGNDD
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]