| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fliK [C]
Identifier: 167623384
GI number: 167623384
Start: 1751674
End: 1753185
Strand: Direct
Name: fliK [C]
Synonym: Shal_1453
Alternate gene names: 167623384
Gene position: 1751674-1753185 (Clockwise)
Preceding gene: 167623383
Following gene: 167623385
Centisome position: 33.51
GC content: 48.21
Gene sequence:
>1512_bases ATGCAGCAGATGAACAATATTTTACTCAGTAGCCCTGAGCCAAGCAAGAAGGCGACTGAAAACCACAGCAAGTCTGTAGA ATCCTCTTTGGAGCCATCTCAGAAACCCAAGACAAACTCCGAAGGTGATAGCTTTTCGGCTGCGCTGGAAAAAGTGGGTA AGCAGACACAGGACAGAGCAAATACACAATCAGCTGCAAAAAAAGCCCTTGCTGGAGATGAAAATCTAGCAGAAAGCACA ATTAAGGCGGAAACAAAGGATGAGAGTGCGACTGACGATGTAAGCCAAGTGTTTGCACAGATCAATCTTGCTAATAACTT TGGTAGTGAGGCTCAGCTTGCCGCTAACGGCGAAAGCTTGCCGTTAGCAACAGAACCGCTGGAGCCTGGCAAACTCGGTG ATGATTTAACTGCTAGCGAATTACCCGATGAAATCTTAATGGCGCTGAGTCAACAGTCTGGCATGTCAGAGCAAGAACTG AGTAAGCTTTCAGCGGCGGAGTTAAAAAACCTATTACAGCAAAGCCAAATCCTCGATGCTAATGGCGAATTAAAAGCTGA GTTTGCTGCTATGGCTAATGGTAACCTCGGCTTAGGCGATAATCAGCAGTCAAAAGAGCAAGGCGCTGCGCTAGCTGGGC AGGCTGGAGTGACAGATAAAGCGGCTCAGGCCAATATTGCAATGGATCCTAAAGTACTACAATCTGAACTAAAGGGCGCT GACGCTAAAAATACAAACGAGACTCGAGATATTTTCGGTAAAGAGCTCGCTGGGCTCACTCAGTCGCAATCTCAGAGCAC CAGTGCTGAACAGCTAAAAGCGGCTAAAAATGCTGAAGGGACAAGTCAAACTATAGCAAATCAGCTTACTGCGACCGAGC AGCTTAAAACGGCTGAACTGTCGGTGCGAATGATGTCGTCGCAAACGGGGCAAGAGGCAAACTTAGCCGGCGTAAACACT GACGCTGCGCAAGATCTTAAAGCGGTTATAGGGCTACAAAGTCAAGCATTACAGCTGCAGTCGGGAGCTAATCGTCAAGA GCTACCACAGTTCCAGTTCGCGTTGAAACAAGCGGGTGAGCAAACGCCGCCAATGCAGCAGATGATCCAGCGTTTCTCTC CCATGATGAATCAGCAGCTTATCACCATGGTTAGTAATGGGGTGCAGCATGCTGAAATTCGCTTAGACCCACCAGAACTC GGCCATATGATGGTGCGAATTCAAGTCCAAGGCGATACCACTCAAGTTCAATTTCAAGTGAGTCAACATCAAACTCGTGA TCTCGTCGAGCAAGCAATGCCAAGGTTACGTGAAATGCTGGCAGAGCAAGGCATGCAGCTAACCGATGGCCAAGTGTCCC AAGGTAGCGGTGGAAATAGCGACGGTGAGCAGGGGAGTGGTCGCGGAAATGACAACGGCATGGCCGAAACGGATGAAATT TCGGCAGAAGAGTTGCTCGCAAGGTCAAATCTATCAACAAGTTCGGCTTCAGGTATAGATTATTACGCATAA
Upstream 100 bases:
>100_bases CATTATTATTGCTTTATATTGTATTCACAGCTTAGGTTAAGCCGATATTTTGACATATTTCGTGTAGGTTGGTTTGTGAG TTAACGCTGATGGAGACGCA
Downstream 100 bases:
>100_bases GCAGGTAATCTATAGCAGTTTAAGAATATTGAAATTAATCAGTACTCGAGCAAGGGAATGAAAAATGGCGGAAGAAGCAG CGTTAGAGCTAGAAGATAGT
Product: flagellar hook-length control protein
Products: NA
Alternate protein names: Flagellar Hook-Length Control Protein FliK; Polar Flagellar Hook-Length Control Protein FliK; Flagellar Protein; Flagellar Hook-Length Control Protein-Like Protein; Flagellar Hook Length Control Protein FliK; Polar Flagellar Hook-Length Control Protein
Number of amino acids: Translated: 503; Mature: 503
Protein sequence:
>503_residues MQQMNNILLSSPEPSKKATENHSKSVESSLEPSQKPKTNSEGDSFSAALEKVGKQTQDRANTQSAAKKALAGDENLAEST IKAETKDESATDDVSQVFAQINLANNFGSEAQLAANGESLPLATEPLEPGKLGDDLTASELPDEILMALSQQSGMSEQEL SKLSAAELKNLLQQSQILDANGELKAEFAAMANGNLGLGDNQQSKEQGAALAGQAGVTDKAAQANIAMDPKVLQSELKGA DAKNTNETRDIFGKELAGLTQSQSQSTSAEQLKAAKNAEGTSQTIANQLTATEQLKTAELSVRMMSSQTGQEANLAGVNT DAAQDLKAVIGLQSQALQLQSGANRQELPQFQFALKQAGEQTPPMQQMIQRFSPMMNQQLITMVSNGVQHAEIRLDPPEL GHMMVRIQVQGDTTQVQFQVSQHQTRDLVEQAMPRLREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEI SAEELLARSNLSTSSASGIDYYA
Sequences:
>Translated_503_residues MQQMNNILLSSPEPSKKATENHSKSVESSLEPSQKPKTNSEGDSFSAALEKVGKQTQDRANTQSAAKKALAGDENLAEST IKAETKDESATDDVSQVFAQINLANNFGSEAQLAANGESLPLATEPLEPGKLGDDLTASELPDEILMALSQQSGMSEQEL SKLSAAELKNLLQQSQILDANGELKAEFAAMANGNLGLGDNQQSKEQGAALAGQAGVTDKAAQANIAMDPKVLQSELKGA DAKNTNETRDIFGKELAGLTQSQSQSTSAEQLKAAKNAEGTSQTIANQLTATEQLKTAELSVRMMSSQTGQEANLAGVNT DAAQDLKAVIGLQSQALQLQSGANRQELPQFQFALKQAGEQTPPMQQMIQRFSPMMNQQLITMVSNGVQHAEIRLDPPEL GHMMVRIQVQGDTTQVQFQVSQHQTRDLVEQAMPRLREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEI SAEELLARSNLSTSSASGIDYYA >Mature_503_residues MQQMNNILLSSPEPSKKATENHSKSVESSLEPSQKPKTNSEGDSFSAALEKVGKQTQDRANTQSAAKKALAGDENLAEST IKAETKDESATDDVSQVFAQINLANNFGSEAQLAANGESLPLATEPLEPGKLGDDLTASELPDEILMALSQQSGMSEQEL SKLSAAELKNLLQQSQILDANGELKAEFAAMANGNLGLGDNQQSKEQGAALAGQAGVTDKAAQANIAMDPKVLQSELKGA DAKNTNETRDIFGKELAGLTQSQSQSTSAEQLKAAKNAEGTSQTIANQLTATEQLKTAELSVRMMSSQTGQEANLAGVNT DAAQDLKAVIGLQSQALQLQSGANRQELPQFQFALKQAGEQTPPMQQMIQRFSPMMNQQLITMVSNGVQHAEIRLDPPEL GHMMVRIQVQGDTTQVQFQVSQHQTRDLVEQAMPRLREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEI SAEELLARSNLSTSSASGIDYYA
Specific function: Controls The Length Of The Flagellar Hook. [C]
COG id: COG3144
COG function: function code N; Flagellar hook-length control protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53497; Mature: 53497
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQMNNILLSSPEPSKKATENHSKSVESSLEPSQKPKTNSEGDSFSAALEKVGKQTQDRA CCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH NTQSAAKKALAGDENLAESTIKAETKDESATDDVSQVFAQINLANNFGSEAQLAANGESL HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCC PLATEPLEPGKLGDDLTASELPDEILMALSQQSGMSEQELSKLSAAELKNLLQQSQILDA CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC NGELKAEFAAMANGNLGLGDNQQSKEQGAALAGQAGVTDKAAQANIAMDPKVLQSELKGA CCCHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCCCCHHHHCCCCCCHHHHHHHHCCC DAKNTNETRDIFGKELAGLTQSQSQSTSAEQLKAAKNAEGTSQTIANQLTATEQLKTAEL CCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SVRMMSSQTGQEANLAGVNTDAAQDLKAVIGLQSQALQLQSGANRQELPQFQFALKQAGE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC QTPPMQQMIQRFSPMMNQQLITMVSNGVQHAEIRLDPPELGHMMVRIQVQGDTTQVQFQV CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCEEEEEEECCCCEEEEEEH SQHQTRDLVEQAMPRLREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEI HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC SAEELLARSNLSTSSASGIDYYA CHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MQQMNNILLSSPEPSKKATENHSKSVESSLEPSQKPKTNSEGDSFSAALEKVGKQTQDRA CCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH NTQSAAKKALAGDENLAESTIKAETKDESATDDVSQVFAQINLANNFGSEAQLAANGESL HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCC PLATEPLEPGKLGDDLTASELPDEILMALSQQSGMSEQELSKLSAAELKNLLQQSQILDA CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC NGELKAEFAAMANGNLGLGDNQQSKEQGAALAGQAGVTDKAAQANIAMDPKVLQSELKGA CCCHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCCCCHHHHCCCCCCHHHHHHHHCCC DAKNTNETRDIFGKELAGLTQSQSQSTSAEQLKAAKNAEGTSQTIANQLTATEQLKTAEL CCCCCCHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH SVRMMSSQTGQEANLAGVNTDAAQDLKAVIGLQSQALQLQSGANRQELPQFQFALKQAGE HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC QTPPMQQMIQRFSPMMNQQLITMVSNGVQHAEIRLDPPELGHMMVRIQVQGDTTQVQFQV CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCEEEEEEECCCCEEEEEEH SQHQTRDLVEQAMPRLREMLAEQGMQLTDGQVSQGSGGNSDGEQGSGRGNDNGMAETDEI HHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC SAEELLARSNLSTSSASGIDYYA CHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA