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The map label for this gene is slyD [H]

Identifier: 167623047

GI number: 167623047

Start: 1351338

End: 1351958

Strand: Reverse

Name: slyD [H]

Synonym: Shal_1113

Alternate gene names: 167623047

Gene position: 1351958-1351338 (Counterclockwise)

Preceding gene: 167623052

Following gene: 167623046

Centisome position: 25.87

GC content: 50.24

Gene sequence:

>621_bases
ATGAAAATCACCGAAAAATGTGCTGTTAGCATCAATTACCGATTATCAGATGCGAAAGGCCAGCTTGTAGAAAGTTCTTT
TGAAGGCGAGCCAATGATCTATCTGCATGGTGCAGAAAACATGATCCCAGGTTTAGAAGCTGCGCTTGAAGGCAAAGCAC
AGGGTGACATCCTTGATGTAACTGTTGATGCTGAGCAAGGCTACGGCCCATACCATGACGGGCTTCGCCAAGAAGTCCCA
TTGTCAGCATTTGGCGACATCGAAGACATCGTTCCTGGTATGCGCTTTATTGCAGAGACAGAAATGGGTCAGCGTCCAGT
ACAGGTTACTGAAGTTAAGGACGACGTAGTCATTGTTGACGGCAACCACCCGCTTGCGGGTCAGTCATTAGTATTCCATG
TGGAAGTACTTGACGTTCGTGAAGCAACTGAAGAAGAGATTGCACACGGCCATATTCACGCTCACGGCGGCGGATGCGGC
GGACATGAACATTCTCATGAAGGCGGATGTTGTGGCGGCGGACACGATCACGGACACGAAGGCGGATGCTGCAGTGACGA
TGAGACCAAAGAAGCTAAAGAAGGCTGTGACGGTAACGGCGGCTGTGGCTGCAGACACTAA

Upstream 100 bases:

>100_bases
AAGTGTAAAGATGTGGCTTAGGTAGCAGAAGTGCATTCATTCTATCGCAAATAACGTTAAAGCAGGCTAGAATGCGCGCA
AATTTCCGATTGGAGCCAAT

Downstream 100 bases:

>100_bases
ATCCTTCTAGTTCTTTAGAATGAATTTGAGCCCACTTCACTGATTTAAATGAAGCGGGCTTTTTTATGGTCTACACTATT
TAAATTGAACAATGGAATTG

Product: FKBP-type peptidylprolyl isomerase

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKITEKCAVSINYRLSDAKGQLVESSFEGEPMIYLHGAENMIPGLEAALEGKAQGDILDVTVDAEQGYGPYHDGLRQEVP
LSAFGDIEDIVPGMRFIAETEMGQRPVQVTEVKDDVVIVDGNHPLAGQSLVFHVEVLDVREATEEEIAHGHIHAHGGGCG
GHEHSHEGGCCGGGHDHGHEGGCCSDDETKEAKEGCDGNGGCGCRH

Sequences:

>Translated_206_residues
MKITEKCAVSINYRLSDAKGQLVESSFEGEPMIYLHGAENMIPGLEAALEGKAQGDILDVTVDAEQGYGPYHDGLRQEVP
LSAFGDIEDIVPGMRFIAETEMGQRPVQVTEVKDDVVIVDGNHPLAGQSLVFHVEVLDVREATEEEIAHGHIHAHGGGCG
GHEHSHEGGCCGGGHDHGHEGGCCSDDETKEAKEGCDGNGGCGCRH
>Mature_206_residues
MKITEKCAVSINYRLSDAKGQLVESSFEGEPMIYLHGAENMIPGLEAALEGKAQGDILDVTVDAEQGYGPYHDGLRQEVP
LSAFGDIEDIVPGMRFIAETEMGQRPVQVTEVKDDVVIVDGNHPLAGQSLVFHVEVLDVREATEEEIAHGHIHAHGGGCG
GHEHSHEGGCCGGGHDHGHEGGCCSDDETKEAKEGCDGNGGCGCRH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=148, Percent_Identity=49.3243243243243, Blast_Score=137, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 21850; Mature: 21850

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKITEKCAVSINYRLSDAKGQLVESSFEGEPMIYLHGAENMIPGLEAALEGKAQGDILDV
CCCCCCEEEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEE
TVDAEQGYGPYHDGLRQEVPLSAFGDIEDIVPGMRFIAETEMGQRPVQVTEVKDDVVIVD
EEECCCCCCCHHHCHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
GNHPLAGQSLVFHVEVLDVREATEEEIAHGHIHAHGGGCGGHEHSHEGGCCGGGHDHGHE
CCCCCCCCEEEEEEEEECCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
GGCCSDDETKEAKEGCDGNGGCGCRH
CCCCCCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKITEKCAVSINYRLSDAKGQLVESSFEGEPMIYLHGAENMIPGLEAALEGKAQGDILDV
CCCCCCEEEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCEEEE
TVDAEQGYGPYHDGLRQEVPLSAFGDIEDIVPGMRFIAETEMGQRPVQVTEVKDDVVIVD
EEECCCCCCCHHHCHHHCCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
GNHPLAGQSLVFHVEVLDVREATEEEIAHGHIHAHGGGCGGHEHSHEGGCCGGGHDHGHE
CCCCCCCCEEEEEEEEECCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
GGCCSDDETKEAKEGCDGNGGCGCRH
CCCCCCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]