| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622974
Identifier: 167622974
GI number: 167622974
Start: 1268336
End: 1270855
Strand: Reverse
Name: 167622974
Synonym: Shal_1040
Alternate gene names: NA
Gene position: 1270855-1268336 (Counterclockwise)
Preceding gene: 167622975
Following gene: 167622973
Centisome position: 24.31
GC content: 48.25
Gene sequence:
>2520_bases ATGTCTCGCAACCCGCTCTTAATGTATGCCCTGATAGCCATCTGCAGTCTGCTGTTATTCAGCGCTAATGCGATGAGCAA CAGCTATCAATTACCCACACAAGCATTACAGGATGTCGTTGAGCAAACTAAAAATGTAAGCACTCGCTTATCTCAAGATA AGCAATGGCTTGCGATATTAACCCCAAGAAAGCACCTTTCAATCGATACGCTGGCACAAACTGAGCGCAAGCTTGCAGGT CTAAGAGTCTCACCAGAGCTGCTGATCCCAAGCCGAATAAAGTACAGCTATTTGAGCGTCGAGCTAATTAACCTCACTAA ATTAAAAGCCGATGCGGAACCTTTTACCATACCACTACCAAGCGCTATGCAGTTGGCCAATGTCAGCTTCTCTCCCGATA GTCGCTACCTAAGCTATATCGGCTTAACTAAGCATGGCGCAGATCTGTTTATTTATGATTTAGAAAAACAGCAGAGCCGC AAACTCAATCCAAGCCGCCTAAACGCCACATTGGGATTGAAATATATCTGGCAAAACGACAGCAAGGGAGTGTTTACTAA CCTTGCAACAGCGACTAGTTCTAATAGCAACCCAGTGGCAACCGCACCGAATATCAGTGAAACCTCAGGCCAGAAAGCGC CGCGCAGAACCTATCAAGACTTGCTTAAGAACCCACAAGATGAGGCCGAATTCACCGCATTAACCACCAGTCAGTTAAGC TTTATCTCCCTTAATGGCGATGTTAAGCCTATCGGCAAGCCCGCCATTAATATCGGCTACAGTCTGTCGCCTAACGATAA ATATTTAGTGGTCAAACGTATCGCTTCGCCTTTCTCTTATATGGTCAAATACTATGACTTCGCCCAGTCGGTAGAGCTAT TTAGCCAGACGGGTGAAAAACTACAAACCCTTGCGCACCTAGAAAGCAGTGAGTACCGCCCTCCGGGCAGCGACTCGGTA CGCAAAGGTCCGCGCATGATCCATTGGCGTAGCGATAAGCCAGATACCCTCGCCTTCGTGAAAGCCCTCGATAAGGGTGA CAGTCGCATCAAAATCAACTACCGCGATCAACTGCTACAACTCAGTGCACCTTTTACTCAAAAGCCTATGCCACTCACCA AGACCCCTTGGCGGATCAGTAAAATAACCTGGGGAGAGCAAAACACTGCACTCGTCACAGAGCGACAATCAGATAAGAAA CAGATGCGTGTCAGTCTGTTAGATACCTCCACTGACAGTTCTCAAGGGTTATCTCTCTGGTATCAAAAGGCAATTCGCGA CACCTATAATGCCCCCGGTAGTCTTTATCGTCAAAACGCTAAGCTTAACGGTAAACATTTAGGACGAGTCTTCAAGTTAC ATGACAATAGCTTACTGCACTACGGTCTTGGCGCCTCACCTGAGGGCTATCAGCCTTTCTTACAGTCATCATTACTGACA CCACTAAAAGGTGAGCAAAGCATAGCTAAACCAACGACCCTGTGGCAGTCATCGACGCAGCAATTGGAAAGAGTTAAATA TATTCTCAAGCTTGAGCCGCTAACGCTGATCATCAGCAGGCAAGGCACTGATACCCCCTCGCACTTGGTGATGCTAGATG TTGCGTCAGGTGACGAGCAACTGCTGTATCAAAACCAACATAAGCTCGAGGCTTACCAAGGCATGACTCGCCAGCTAGTT AACTACAGCCGTGATGACGGCTTGCCGCTATCGGGCGTGCTATATCTCCCCGCAGGTTATAGTACTGAGGATGGCCCACT ACCTGTTTTGATGTGGGCTTATCCCCGAGAGTACAAAAATGCTGAGGTCGCCAGCCAAGTAAACTACTCGCCTAATCAAT ACAATCAAATTAGCCCCAAAGGCCCGGTACCATTTGCCGCCAAGGGGTATGCTATTTTCGACAAGGTTGCCATGCCGATT GTTGGTGAGGGGAGTGATAAACCCAACGATAGCTTTCGCCGTCAGTTAGTCGCTAACGCCAATGCCGCAATCGATACCTT AGTGGAGATGGGCGTTGCCGATAGAGATCGCGTAGCCATTGGCGGTCACTCTTATGGTGCCTTTATGGTAGCGAACCTGC TGGCCCATTCAGACCTGTTTGCCGCTGGTATTGCCAGAAGCGGCGCCTACAACCGCACGTTAACTCCCTTTGGTTTTCAG CATGAGAAACGTAATTTCTGGGAGGCTCCGAGCCTCTACCAACAGATGTCTCCCTTTACCCATGCCGATAAAATCGATGA ACCATTGCTGCTGATGCACGGCGAAATGGACTCAAACTCCGGCACCTATCCGATGCAATCATCGAGACTATTCAAGGCAA TTCGAGGGCTCGGAGGGCAAGCACGTTTAGTGACCTTTCCCTATGAGAGCCATAGCTATAAAGCGAAAGAATCGATTATG CACATGCTGTGGGAACAAGAAACTTGGCTTGAGCAGTATCTAAAAAAGCCTGCTCTGGCTCGAGGCAGCGAAGCGCTTAA ACAGAGGAGTGAGACTGAAACGCAAATGACTTTTCATTAA
Upstream 100 bases:
>100_bases TTTAATCTCGTTTAAATCTCCCTTCGATACGAGAAATAAGCGCCCAACTTTGGGCGCTTATCTTTCCCGCTTACCTCTTT CCTATTATCAGGAGATAAGA
Downstream 100 bases:
>100_bases ACCTTAACCCCGATATAAGGCTGCACGAGCGCAATGAGTTGCAGCCATTTATTTCCCATTTGCGATTTTGGATAGCTGAC CCATGACTAATTTAAACTCG
Product: peptidase S9 prolyl oligopeptidase
Products: NA
Alternate protein names: Peptidase S9 Prolyl Oligopeptidase Active Site Region; Glutamyl Peptidase; Acylaminoacyl-Peptidase; Prolyl Oligopeptidase Family Protein; Acylamino-Acid-Releasing; Aminoacyl Peptidase; Peptidase; Prolyl Oligopeptidase; Peptidase S9A/B/C Family Catalytic Domain Protein; Exported Oligopeptidase; Beta-Lactamase; Serine Peptidase; Histidinol Phosphate Phosphatase HisJ Family; Dipeptidyl Aminopeptidase/Acylaminoacyl-Peptidase; Dienelactone Hydrolase Family; S9C Family Peptidase; Peptidase S9A/B/C Family; S9 Family Peptidase; X-Pro Dipeptidyl-Peptidase; Acylaminoacyl Peptidase; Secreted Protein
Number of amino acids: Translated: 839; Mature: 838
Protein sequence:
>839_residues MSRNPLLMYALIAICSLLLFSANAMSNSYQLPTQALQDVVEQTKNVSTRLSQDKQWLAILTPRKHLSIDTLAQTERKLAG LRVSPELLIPSRIKYSYLSVELINLTKLKADAEPFTIPLPSAMQLANVSFSPDSRYLSYIGLTKHGADLFIYDLEKQQSR KLNPSRLNATLGLKYIWQNDSKGVFTNLATATSSNSNPVATAPNISETSGQKAPRRTYQDLLKNPQDEAEFTALTTSQLS FISLNGDVKPIGKPAINIGYSLSPNDKYLVVKRIASPFSYMVKYYDFAQSVELFSQTGEKLQTLAHLESSEYRPPGSDSV RKGPRMIHWRSDKPDTLAFVKALDKGDSRIKINYRDQLLQLSAPFTQKPMPLTKTPWRISKITWGEQNTALVTERQSDKK QMRVSLLDTSTDSSQGLSLWYQKAIRDTYNAPGSLYRQNAKLNGKHLGRVFKLHDNSLLHYGLGASPEGYQPFLQSSLLT PLKGEQSIAKPTTLWQSSTQQLERVKYILKLEPLTLIISRQGTDTPSHLVMLDVASGDEQLLYQNQHKLEAYQGMTRQLV NYSRDDGLPLSGVLYLPAGYSTEDGPLPVLMWAYPREYKNAEVASQVNYSPNQYNQISPKGPVPFAAKGYAIFDKVAMPI VGEGSDKPNDSFRRQLVANANAAIDTLVEMGVADRDRVAIGGHSYGAFMVANLLAHSDLFAAGIARSGAYNRTLTPFGFQ HEKRNFWEAPSLYQQMSPFTHADKIDEPLLLMHGEMDSNSGTYPMQSSRLFKAIRGLGGQARLVTFPYESHSYKAKESIM HMLWEQETWLEQYLKKPALARGSEALKQRSETETQMTFH
Sequences:
>Translated_839_residues MSRNPLLMYALIAICSLLLFSANAMSNSYQLPTQALQDVVEQTKNVSTRLSQDKQWLAILTPRKHLSIDTLAQTERKLAG LRVSPELLIPSRIKYSYLSVELINLTKLKADAEPFTIPLPSAMQLANVSFSPDSRYLSYIGLTKHGADLFIYDLEKQQSR KLNPSRLNATLGLKYIWQNDSKGVFTNLATATSSNSNPVATAPNISETSGQKAPRRTYQDLLKNPQDEAEFTALTTSQLS FISLNGDVKPIGKPAINIGYSLSPNDKYLVVKRIASPFSYMVKYYDFAQSVELFSQTGEKLQTLAHLESSEYRPPGSDSV RKGPRMIHWRSDKPDTLAFVKALDKGDSRIKINYRDQLLQLSAPFTQKPMPLTKTPWRISKITWGEQNTALVTERQSDKK QMRVSLLDTSTDSSQGLSLWYQKAIRDTYNAPGSLYRQNAKLNGKHLGRVFKLHDNSLLHYGLGASPEGYQPFLQSSLLT PLKGEQSIAKPTTLWQSSTQQLERVKYILKLEPLTLIISRQGTDTPSHLVMLDVASGDEQLLYQNQHKLEAYQGMTRQLV NYSRDDGLPLSGVLYLPAGYSTEDGPLPVLMWAYPREYKNAEVASQVNYSPNQYNQISPKGPVPFAAKGYAIFDKVAMPI VGEGSDKPNDSFRRQLVANANAAIDTLVEMGVADRDRVAIGGHSYGAFMVANLLAHSDLFAAGIARSGAYNRTLTPFGFQ HEKRNFWEAPSLYQQMSPFTHADKIDEPLLLMHGEMDSNSGTYPMQSSRLFKAIRGLGGQARLVTFPYESHSYKAKESIM HMLWEQETWLEQYLKKPALARGSEALKQRSETETQMTFH >Mature_838_residues SRNPLLMYALIAICSLLLFSANAMSNSYQLPTQALQDVVEQTKNVSTRLSQDKQWLAILTPRKHLSIDTLAQTERKLAGL RVSPELLIPSRIKYSYLSVELINLTKLKADAEPFTIPLPSAMQLANVSFSPDSRYLSYIGLTKHGADLFIYDLEKQQSRK LNPSRLNATLGLKYIWQNDSKGVFTNLATATSSNSNPVATAPNISETSGQKAPRRTYQDLLKNPQDEAEFTALTTSQLSF ISLNGDVKPIGKPAINIGYSLSPNDKYLVVKRIASPFSYMVKYYDFAQSVELFSQTGEKLQTLAHLESSEYRPPGSDSVR KGPRMIHWRSDKPDTLAFVKALDKGDSRIKINYRDQLLQLSAPFTQKPMPLTKTPWRISKITWGEQNTALVTERQSDKKQ MRVSLLDTSTDSSQGLSLWYQKAIRDTYNAPGSLYRQNAKLNGKHLGRVFKLHDNSLLHYGLGASPEGYQPFLQSSLLTP LKGEQSIAKPTTLWQSSTQQLERVKYILKLEPLTLIISRQGTDTPSHLVMLDVASGDEQLLYQNQHKLEAYQGMTRQLVN YSRDDGLPLSGVLYLPAGYSTEDGPLPVLMWAYPREYKNAEVASQVNYSPNQYNQISPKGPVPFAAKGYAIFDKVAMPIV GEGSDKPNDSFRRQLVANANAAIDTLVEMGVADRDRVAIGGHSYGAFMVANLLAHSDLFAAGIARSGAYNRTLTPFGFQH EKRNFWEAPSLYQQMSPFTHADKIDEPLLLMHGEMDSNSGTYPMQSSRLFKAIRGLGGQARLVTFPYESHSYKAKESIMH MLWEQETWLEQYLKKPALARGSEALKQRSETETQMTFH
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94075; Mature: 93944
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: PS00152 ATPASE_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNPLLMYALIAICSLLLFSANAMSNSYQLPTQALQDVVEQTKNVSTRLSQDKQWLAIL CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE TPRKHLSIDTLAQTERKLAGLRVSPELLIPSRIKYSYLSVELINLTKLKADAEPFTIPLP CCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEEEEEEEEEECCCCCEEECCC SAMQLANVSFSPDSRYLSYIGLTKHGADLFIYDLEKQQSRKLNPSRLNATLGLKYIWQND CHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCHHHHCCEEEEEEEEECC SKGVFTNLATATSSNSNPVATAPNISETSGQKAPRRTYQDLLKNPQDEAEFTALTTSQLS CCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCEE FISLNGDVKPIGKPAINIGYSLSPNDKYLVVKRIASPFSYMVKYYDFAQSVELFSQTGEK EEEECCCCCCCCCCCEEECEEECCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHH LQTLAHLESSEYRPPGSDSVRKGPRMIHWRSDKPDTLAFVKALDKGDSRIKINYRDQLLQ HHHHHHHHCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHE LSAPFTQKPMPLTKTPWRISKITWGEQNTALVTERQSDKKQMRVSLLDTSTDSSQGLSLW ECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCHHHHEEEEEECCCCCCCHHHHH YQKAIRDTYNAPGSLYRQNAKLNGKHLGRVFKLHDNSLLHYGLGASPEGYQPFLQSSLLT HHHHHHHHCCCCHHHHHCCCCCCCHHHCEEEEECCCCEEEECCCCCCCCCHHHHHHHCCC PLKGEQSIAKPTTLWQSSTQQLERVKYILKLEPLTLIISRQGTDTPSHLVMLDVASGDEQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCEEEEEEECCCCHH LLYQNQHKLEAYQGMTRQLVNYSRDDGLPLSGVLYLPAGYSTEDGPLPVLMWAYPREYKN HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC AEVASQVNYSPNQYNQISPKGPVPFAAKGYAIFDKVAMPIVGEGSDKPNDSFRRQLVANA CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCHHHHHHHHHCC NAAIDTLVEMGVADRDRVAIGGHSYGAFMVANLLAHSDLFAAGIARSGAYNRTLTPFGFQ CHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC HEKRNFWEAPSLYQQMSPFTHADKIDEPLLLMHGEMDSNSGTYPMQSSRLFKAIRGLGGQ CCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC ARLVTFPYESHSYKAKESIMHMLWEQETWLEQYLKKPALARGSEALKQRSETETQMTFH EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEECC >Mature Secondary Structure SRNPLLMYALIAICSLLLFSANAMSNSYQLPTQALQDVVEQTKNVSTRLSQDKQWLAIL CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE TPRKHLSIDTLAQTERKLAGLRVSPELLIPSRIKYSYLSVELINLTKLKADAEPFTIPLP CCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEEEEEEEEEECCCCCEEECCC SAMQLANVSFSPDSRYLSYIGLTKHGADLFIYDLEKQQSRKLNPSRLNATLGLKYIWQND CHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCHHHHCCCCHHHHCCEEEEEEEEECC SKGVFTNLATATSSNSNPVATAPNISETSGQKAPRRTYQDLLKNPQDEAEFTALTTSQLS CCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCEE FISLNGDVKPIGKPAINIGYSLSPNDKYLVVKRIASPFSYMVKYYDFAQSVELFSQTGEK EEEECCCCCCCCCCCEEECEEECCCCCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHH LQTLAHLESSEYRPPGSDSVRKGPRMIHWRSDKPDTLAFVKALDKGDSRIKINYRDQLLQ HHHHHHHHCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHE LSAPFTQKPMPLTKTPWRISKITWGEQNTALVTERQSDKKQMRVSLLDTSTDSSQGLSLW ECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCHHHHEEEEEECCCCCCCHHHHH YQKAIRDTYNAPGSLYRQNAKLNGKHLGRVFKLHDNSLLHYGLGASPEGYQPFLQSSLLT HHHHHHHHCCCCHHHHHCCCCCCCHHHCEEEEECCCCEEEECCCCCCCCCHHHHHHHCCC PLKGEQSIAKPTTLWQSSTQQLERVKYILKLEPLTLIISRQGTDTPSHLVMLDVASGDEQ CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECCEEEEEECCCCCCCCEEEEEEECCCCHH LLYQNQHKLEAYQGMTRQLVNYSRDDGLPLSGVLYLPAGYSTEDGPLPVLMWAYPREYKN HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCC AEVASQVNYSPNQYNQISPKGPVPFAAKGYAIFDKVAMPIVGEGSDKPNDSFRRQLVANA CHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCCCHHHHHHHHHCC NAAIDTLVEMGVADRDRVAIGGHSYGAFMVANLLAHSDLFAAGIARSGAYNRTLTPFGFQ CHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC HEKRNFWEAPSLYQQMSPFTHADKIDEPLLLMHGEMDSNSGTYPMQSSRLFKAIRGLGGQ CCCCCCCCCHHHHHHCCCCCCHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCC ARLVTFPYESHSYKAKESIMHMLWEQETWLEQYLKKPALARGSEALKQRSETETQMTFH EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA