| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is phoB [H]
Identifier: 167622973
GI number: 167622973
Start: 1266841
End: 1268253
Strand: Reverse
Name: phoB [H]
Synonym: Shal_1039
Alternate gene names: 167622973
Gene position: 1268253-1266841 (Counterclockwise)
Preceding gene: 167622974
Following gene: 167622972
Centisome position: 24.26
GC content: 48.27
Gene sequence:
>1413_bases ATGACTAATTTAAACTCGATTGTTCGTTTATCGGCAATTTACTCAAGCCTTTTGTGTGCCAGTCTGTGGTGCACTTCGGC TCAAGCACAACCCGATGCCCCCTTTGCTCCAGTAATTGTAGCCGAATACCTTCCTAGAAATATCATCTACTTAATTGGTG ACGGTATGGGACCGGCTTATACCTCTGCCTACCGTTTCTATAACGACAACCCGCAAACCCAAAGAGTCGAAAAGACTATC TTCGACCAACTGTTAGTCGGTATGTCGAGCACCTACCCCGACGATGACACCTATGTCACCGACTCGGCGGCCGCAGCTAC GGCGCTCGCGACCAGCTACAAAACCTACAACGGTGCGATTTCGGTTGACCATCAAGGCGGGCCCTTCCCCACATTACTGG AAATGGCAAAAGCTCAAGGAAAAACCACCGCAGTGGTCGTTACCTCACAGATTAACCATGCTACCCCCGCCAGCTTTTTA GCCCACAATGAAAGTCGCAGGAACTATGACCAAATAGCCGATAGTTATCTGTCTAACCTTATCGACAAGCGCCCGGTTGC CGACCTCATGCTTGGCGGTGGCACACAATATTTTGCTCGCAACGACCGAGATCTAACATTAGAGTTTCAAGAGTATGGCT ATCACTATATTGATAGCCTTAGCGATCTAAGCAGTATCGAAAATCTGCCCGCTCTAGGGCTGTTTGCCCCTAAAGGTTTA CCCTATGCGATTGAAAGCCAAGACCCTCTTAGACTGACTACCATGACCCGCAAGGCTCTCTCCTTGCTATCGAATCAAGA AGCCCCCTTTGTGATGATGGTAGAAGCCAGTCATATAGATTGGTGTGGCCACAGCAACGATATCGCGTGCGCGATGAATG AGATGGATGACTTCGCTAATACCTTAAGTCTAGTTAAGCGCTATGTCGATAGTCACCCTGACACCTTACTCGTGGCGACG GCGGACCACTCTACCGGTGGCCTGACATTGGGCAGGGACGGTACTTATCAATGGCAAGGCCAGTTACTACATCAAGTTCA CAGCTTGCCAAGCACGATTTCCCAGCTCATCATTGCCAACCCAGAGGTGCTAAATGATTTAGCCGCATTTAGTGCTTTTT TACGCCCCCATATCAGCATTGATATTGAAGACAGAAAAATGGATGGGCTAAGAAAAATGCTCAACTCTCGTTTGTCTCAC CACAAGCATCAACAGAAAATAGAGGACGATCTAAAACAAACGATTGATAAGCTGACCTATACAGGATGGACAACGGGTGG CCATGACGCAATCGATGTGCCTGTTTACGCCTATGGCCAAGGCGCGCTGTACTTTAGAGGTCATAAAGACAATAGCGAAA TCGCTGCGACGCTTATTCAGATGGTGCAAGATGAGCGCTACAAGGTTAAGTAA
Upstream 100 bases:
>100_bases CAAATGACTTTTCATTAAACCTTAACCCCGATATAAGGCTGCACGAGCGCAATGAGTTGCAGCCATTTATTTCCCATTTG CGATTTTGGATAGCTGACCC
Downstream 100 bases:
>100_bases CCGTTATATGAACCTGACTCAACAATGACTGCCGAGTTTATTGGCATACTTTGGCTTGTCTTGGGTGGCTGTAAGATTAG CTGTCAATATAGAGAAACAG
Product: alkaline phosphatase
Products: NA
Alternate protein names: Alkaline phosphatase III; APase III [H]
Number of amino acids: Translated: 470; Mature: 469
Protein sequence:
>470_residues MTNLNSIVRLSAIYSSLLCASLWCTSAQAQPDAPFAPVIVAEYLPRNIIYLIGDGMGPAYTSAYRFYNDNPQTQRVEKTI FDQLLVGMSSTYPDDDTYVTDSAAAATALATSYKTYNGAISVDHQGGPFPTLLEMAKAQGKTTAVVVTSQINHATPASFL AHNESRRNYDQIADSYLSNLIDKRPVADLMLGGGTQYFARNDRDLTLEFQEYGYHYIDSLSDLSSIENLPALGLFAPKGL PYAIESQDPLRLTTMTRKALSLLSNQEAPFVMMVEASHIDWCGHSNDIACAMNEMDDFANTLSLVKRYVDSHPDTLLVAT ADHSTGGLTLGRDGTYQWQGQLLHQVHSLPSTISQLIIANPEVLNDLAAFSAFLRPHISIDIEDRKMDGLRKMLNSRLSH HKHQQKIEDDLKQTIDKLTYTGWTTGGHDAIDVPVYAYGQGALYFRGHKDNSEIAATLIQMVQDERYKVK
Sequences:
>Translated_470_residues MTNLNSIVRLSAIYSSLLCASLWCTSAQAQPDAPFAPVIVAEYLPRNIIYLIGDGMGPAYTSAYRFYNDNPQTQRVEKTI FDQLLVGMSSTYPDDDTYVTDSAAAATALATSYKTYNGAISVDHQGGPFPTLLEMAKAQGKTTAVVVTSQINHATPASFL AHNESRRNYDQIADSYLSNLIDKRPVADLMLGGGTQYFARNDRDLTLEFQEYGYHYIDSLSDLSSIENLPALGLFAPKGL PYAIESQDPLRLTTMTRKALSLLSNQEAPFVMMVEASHIDWCGHSNDIACAMNEMDDFANTLSLVKRYVDSHPDTLLVAT ADHSTGGLTLGRDGTYQWQGQLLHQVHSLPSTISQLIIANPEVLNDLAAFSAFLRPHISIDIEDRKMDGLRKMLNSRLSH HKHQQKIEDDLKQTIDKLTYTGWTTGGHDAIDVPVYAYGQGALYFRGHKDNSEIAATLIQMVQDERYKVK >Mature_469_residues TNLNSIVRLSAIYSSLLCASLWCTSAQAQPDAPFAPVIVAEYLPRNIIYLIGDGMGPAYTSAYRFYNDNPQTQRVEKTIF DQLLVGMSSTYPDDDTYVTDSAAAATALATSYKTYNGAISVDHQGGPFPTLLEMAKAQGKTTAVVVTSQINHATPASFLA HNESRRNYDQIADSYLSNLIDKRPVADLMLGGGTQYFARNDRDLTLEFQEYGYHYIDSLSDLSSIENLPALGLFAPKGLP YAIESQDPLRLTTMTRKALSLLSNQEAPFVMMVEASHIDWCGHSNDIACAMNEMDDFANTLSLVKRYVDSHPDTLLVATA DHSTGGLTLGRDGTYQWQGQLLHQVHSLPSTISQLIIANPEVLNDLAAFSAFLRPHISIDIEDRKMDGLRKMLNSRLSHH KHQQKIEDDLKQTIDKLTYTGWTTGGHDAIDVPVYAYGQGALYFRGHKDNSEIAATLIQMVQDERYKVK
Specific function: Unknown
COG id: COG1785
COG function: function code P; Alkaline phosphatase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alkaline phosphatase family [H]
Homologues:
Organism=Homo sapiens, GI116734717, Length=340, Percent_Identity=27.3529411764706, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI294660770, Length=333, Percent_Identity=27.027027027027, Blast_Score=87, Evalue=5e-17, Organism=Homo sapiens, GI94721246, Length=338, Percent_Identity=26.9230769230769, Blast_Score=86, Evalue=8e-17, Organism=Homo sapiens, GI157266296, Length=338, Percent_Identity=27.5147928994083, Blast_Score=84, Evalue=3e-16, Organism=Homo sapiens, GI157266292, Length=346, Percent_Identity=27.4566473988439, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI294660772, Length=280, Percent_Identity=26.4285714285714, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI48994877, Length=336, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=6e-33, Organism=Saccharomyces cerevisiae, GI6320689, Length=504, Percent_Identity=32.5396825396825, Blast_Score=184, Evalue=4e-47, Organism=Drosophila melanogaster, GI18859923, Length=327, Percent_Identity=28.7461773700306, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24651554, Length=341, Percent_Identity=29.9120234604106, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI21355149, Length=340, Percent_Identity=29.1176470588235, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI21355981, Length=324, Percent_Identity=28.3950617283951, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI21355151, Length=326, Percent_Identity=26.6871165644172, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI85725200, Length=333, Percent_Identity=27.9279279279279, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI85815833, Length=333, Percent_Identity=27.9279279279279, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI19921912, Length=359, Percent_Identity=26.7409470752089, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI21358067, Length=335, Percent_Identity=26.5671641791045, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017849 - InterPro: IPR001952 - InterPro: IPR018299 - InterPro: IPR017850 [H]
Pfam domain/function: PF00245 Alk_phosphatase [H]
EC number: =3.1.3.1 [H]
Molecular weight: Translated: 52065; Mature: 51934
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00123 ALKALINE_PHOSPHATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLNSIVRLSAIYSSLLCASLWCTSAQAQPDAPFAPVIVAEYLPRNIIYLIGDGMGPAY CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHH TSAYRFYNDNPQTQRVEKTIFDQLLVGMSSTYPDDDTYVTDSAAAATALATSYKTYNGAI HHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHEECCCEE SVDHQGGPFPTLLEMAKAQGKTTAVVVTSQINHATPASFLAHNESRRNYDQIADSYLSNL EECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH IDKRPVADLMLGGGTQYFARNDRDLTLEFQEYGYHYIDSLSDLSSIENLPALGLFAPKGL HHCCCHHHHHCCCCCCEEECCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC PYAIESQDPLRLTTMTRKALSLLSNQEAPFVMMVEASHIDWCGHSNDIACAMNEMDDFAN CEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCCCCCEEEEHHHHHHHHH TLSLVKRYVDSHPDTLLVATADHSTGGLTLGRDGTYQWQGQLLHQVHSLPSTISQLIIAN HHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PEVLNDLAAFSAFLRPHISIDIEDRKMDGLRKMLNSRLSHHKHQQKIEDDLKQTIDKLTY HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE TGWTTGGHDAIDVPVYAYGQGALYFRGHKDNSEIAATLIQMVQDERYKVK CCCCCCCCCCEECCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TNLNSIVRLSAIYSSLLCASLWCTSAQAQPDAPFAPVIVAEYLPRNIIYLIGDGMGPAY CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHH TSAYRFYNDNPQTQRVEKTIFDQLLVGMSSTYPDDDTYVTDSAAAATALATSYKTYNGAI HHHHHEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHEECCCEE SVDHQGGPFPTLLEMAKAQGKTTAVVVTSQINHATPASFLAHNESRRNYDQIADSYLSNL EECCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH IDKRPVADLMLGGGTQYFARNDRDLTLEFQEYGYHYIDSLSDLSSIENLPALGLFAPKGL HHCCCHHHHHCCCCCCEEECCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC PYAIESQDPLRLTTMTRKALSLLSNQEAPFVMMVEASHIDWCGHSNDIACAMNEMDDFAN CEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEEEEECCCEECCCCCCEEEEHHHHHHHHH TLSLVKRYVDSHPDTLLVATADHSTGGLTLGRDGTYQWQGQLLHQVHSLPSTISQLIIAN HHHHHHHHHHCCCCEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC PEVLNDLAAFSAFLRPHISIDIEDRKMDGLRKMLNSRLSHHKHQQKIEDDLKQTIDKLTY HHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE TGWTTGGHDAIDVPVYAYGQGALYFRGHKDNSEIAATLIQMVQDERYKVK CCCCCCCCCCEECCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1898729; 9202461; 9384377; 2113910; 2105301 [H]