| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is btuB [H]
Identifier: 167622975
GI number: 167622975
Start: 1270951
End: 1273716
Strand: Reverse
Name: btuB [H]
Synonym: Shal_1041
Alternate gene names: 167622975
Gene position: 1273716-1270951 (Counterclockwise)
Preceding gene: 167622977
Following gene: 167622974
Centisome position: 24.37
GC content: 45.44
Gene sequence:
>2766_bases ATGAAACCAAAAACAAAACTTTCAGCATTGAGCCTCGCCATCAGTATGGCAGCGCTAACCCCTACAACCTTGTTTGCAGC TGAAGCGGCAGACAAGAGCGACGCTAAAAAAGAGATGGAAAAAATTGAAGTCACAGGCTCGCGTATTAAGCGTGCCGACT TCGAAGGTGTTTTACCTGTTACAGTCATTACAGCGGACGACATTGCCAATAGTGGCCTTAACTCTATCTCTGAGGTACTG CAATCCTCTGTTGCCAATACGGGTGGTTCACTCAACGGTGAGAGCGATGGTTACACTGATAGTGCTAGCTCTGTGAACCT ACGTGGTATGGGCGCTAACCGCACCTTGGTTCTTATCAATAGCCGCCGTCAAGCCTCCTTTCCAAGTGCTGCCGGTGGCA CCTCGAACTTTGTTGATGTATCAGACATTCCTGCAGCGGCAGTAGAACGCATCGAAATTCTAACCGGTGGTGCCTCGGCA ATTTATGGTTCTGATGCCGTTGGTGGTGTGGTCAACATTATTCTTAAGAAAGAGTACGAAGGCGCGAAGGTTTCAGCTAA ATATAATGACCCAACTCAAGGTGGCGGTGAGGAACTTGATCTGTCTTACCTACAGGGCTTTAATACCGATAAGAGCCAAA CCCTGTTAATCCTCGAATATAAAAAAGCAGAGTCGATTCAAACTTATCAGCGTGACGGCCTATACAGTCCTGCTTACTAT GAAAATGAAGATGGAGACCTTACTTGGGGTGCTGGCCCTTATGGCGATGCCGCGCCTTCAAGTTGGTCTTCAAGAATTAC CGATTACAGCAAGGTTTATCACGAAGATAAGTACGTTAACCTGAGTGAACAACAGTGTGGCGAGCTGTTTGGCGATAAAG GGATTTACAGACCCACTTACAAATATGACTGTTACTACGATAAGTACGCTGACCGTGGCCTAAAATCAGCTTATGACCGA TTCAACTTAGTGCTTAATTCGACTTACGACTTAAACGATGATTGGCAGCTTTACGGTATGGTCAACGCCTCTTACAAAGA ATCGACTAAGTATAAAGACGAAAAAGGCTTCGGTACCAGTATTTATCAAGATGAAGCGACTGGTGCACTAAGCTATGACA AATATGAGTTTGAAGATGATAACCGCTTCTATCTAGCGCGTAGAATGGAAGAGTATCCAGGACCACGTACTTACGATACC CAAAATACTAAGGCTTCGCTCTCATTTGGCGCTGACGGTAACATTGGTGAGTACGAGCTCGATCTCTCTTGGTCAAGCAG CTACAACAAGTACGAAAAGCAAAACCATCACATGGTAAAAGCTGATGCGCTACTCGATATTGTAACTTTCGATCCAAATG ATGCCGACCCATCTAAGTGGTACCCGAATAGTCAAATGACGACTGAACAAGCTAACATGCTTATTGCGGACTCAACTAAA AATTCAGATTCAAGCTTGCACCAGTTCCAAGCGGTATTTGCCGGTGATTTGATGGAGTTGCCAGCGGGCACAGCTGGCTT TGCAACCACTGCCGAGTGGGCGCGTGAAAGTTATGAAGATACCCTAGATGATGTTACCTCAAGCGGTGGCCTAATCGGTA TGGGAGGTACCGGCGGTAAAGGCGATCGAGACCGCGTTGCCGTTGCTGGTGAGTTACAAATCCCACTGTTAGCCAATATC ACGGGAATTAGGTCATTAGATCTTTCAGCTGCACTGCGTTACGACCAGTACCTAGATGATTCTGATGTAGGCGGCGCAAC CACTCCACAAGTAGGACTTTCATACCGTCCAATTGATGAAGTCATGGTTCGTGCTAACTGGGGTAAGAGCTTTAGAGCAC CAGACATGCACCGCCTTTATGCTGGGCGAACTATCGGTTTCGGTGGAACAGATTATCCACACCCAACCATCCCAGATGAG ATTTATGAAGATGATTACCGCTCAATTACTCAAGGTAACCTAAACCTTGAAGAGGAAAAGGGTGAATACTGGAACTTTGG TATTGTAGCCAACATAACCGACAACGCCGATATCACTGTTGACTGGTGGAACATCGAACTTGATGGTGCTGTTAAAACCA TATCAACCGATGAAATGTTAGCCGATCCTTCTTACTACCAAACGGGTAACTACACTAGTTGTGAAGAGATGGATAGAGTC GGTTACCTGACTGAGTACGATGATGACGGTATCGAGAATATCGCTTGTATGCGTAAAGGTCCAATCAACAGTGCTTATGA GGCCTCTGAAGGTATTGATACCAGCTTTAACTATCAGTTCCCAGAAACAGCGATTGGTGATTTCAAATTCAAAGTTGCCG CTTCTTACTTAATTAAGAAAGAGTACCAAGAGCGCATCGATAGCGAAATTGAAGAGCAAACTGAGACCGATTACTTCCCT AAATGGAAAGGTAACGCGAGCCTAAGCTGGAACTATGAAGACTTTAGCGCAACGGTTGCTTACTACTACACGGGTGAAGC ACAAGGTGTCGATCTGTTCGAGTACCAAGATGAGAACGGTGATGATGTTGAGTCAATGGAGACTGACACACTAGATGCTT ATCAAATCGTCAACATTACCTTGAGCTACTACGCACCTTGGGAAGGTAAGTTCACTGCGGGTGTTAAAAACCTAACCGAT GAGATGCCACCTTTGTACGACGAGCGTAACGACAAGCACAATGACTGGCCTTTCTATGAAGATGACAATAGCAGCTATTC AAACACTGGCCGTAGTCTATTCATTGGTTATTCACAGAAGTTTTAA
Upstream 100 bases:
>100_bases ACAGTATTCACCCTAGGAATGACATGCCTTAATCTGATGATGTTGTGCGTAAATATGATTATCGCGTTTAGGGAAATTAT AAAAATAAGGACTGCAATCA
Downstream 100 bases:
>100_bases TCTCGTTTAAATCTCCCTTCGATACGAGAAATAAGCGCCCAACTTTGGGCGCTTATCTTTCCCGCTTACCTCTTTCCTAT TATCAGGAGATAAGAATGTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 921; Mature: 921
Protein sequence:
>921_residues MKPKTKLSALSLAISMAALTPTTLFAAEAADKSDAKKEMEKIEVTGSRIKRADFEGVLPVTVITADDIANSGLNSISEVL QSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPAAAVERIEILTGGASA IYGSDAVGGVVNIILKKEYEGAKVSAKYNDPTQGGGEELDLSYLQGFNTDKSQTLLILEYKKAESIQTYQRDGLYSPAYY ENEDGDLTWGAGPYGDAAPSSWSSRITDYSKVYHEDKYVNLSEQQCGELFGDKGIYRPTYKYDCYYDKYADRGLKSAYDR FNLVLNSTYDLNDDWQLYGMVNASYKESTKYKDEKGFGTSIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDT QNTKASLSFGADGNIGEYELDLSWSSSYNKYEKQNHHMVKADALLDIVTFDPNDADPSKWYPNSQMTTEQANMLIADSTK NSDSSLHQFQAVFAGDLMELPAGTAGFATTAEWARESYEDTLDDVTSSGGLIGMGGTGGKGDRDRVAVAGELQIPLLANI TGIRSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPIDEVMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDE IYEDDYRSITQGNLNLEEEKGEYWNFGIVANITDNADITVDWWNIELDGAVKTISTDEMLADPSYYQTGNYTSCEEMDRV GYLTEYDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGDFKFKVAASYLIKKEYQERIDSEIEEQTETDYFP KWKGNASLSWNYEDFSATVAYYYTGEAQGVDLFEYQDENGDDVESMETDTLDAYQIVNITLSYYAPWEGKFTAGVKNLTD EMPPLYDERNDKHNDWPFYEDDNSSYSNTGRSLFIGYSQKF
Sequences:
>Translated_921_residues MKPKTKLSALSLAISMAALTPTTLFAAEAADKSDAKKEMEKIEVTGSRIKRADFEGVLPVTVITADDIANSGLNSISEVL QSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPAAAVERIEILTGGASA IYGSDAVGGVVNIILKKEYEGAKVSAKYNDPTQGGGEELDLSYLQGFNTDKSQTLLILEYKKAESIQTYQRDGLYSPAYY ENEDGDLTWGAGPYGDAAPSSWSSRITDYSKVYHEDKYVNLSEQQCGELFGDKGIYRPTYKYDCYYDKYADRGLKSAYDR FNLVLNSTYDLNDDWQLYGMVNASYKESTKYKDEKGFGTSIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDT QNTKASLSFGADGNIGEYELDLSWSSSYNKYEKQNHHMVKADALLDIVTFDPNDADPSKWYPNSQMTTEQANMLIADSTK NSDSSLHQFQAVFAGDLMELPAGTAGFATTAEWARESYEDTLDDVTSSGGLIGMGGTGGKGDRDRVAVAGELQIPLLANI TGIRSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPIDEVMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDE IYEDDYRSITQGNLNLEEEKGEYWNFGIVANITDNADITVDWWNIELDGAVKTISTDEMLADPSYYQTGNYTSCEEMDRV GYLTEYDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGDFKFKVAASYLIKKEYQERIDSEIEEQTETDYFP KWKGNASLSWNYEDFSATVAYYYTGEAQGVDLFEYQDENGDDVESMETDTLDAYQIVNITLSYYAPWEGKFTAGVKNLTD EMPPLYDERNDKHNDWPFYEDDNSSYSNTGRSLFIGYSQKF >Mature_921_residues MKPKTKLSALSLAISMAALTPTTLFAAEAADKSDAKKEMEKIEVTGSRIKRADFEGVLPVTVITADDIANSGLNSISEVL QSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPAAAVERIEILTGGASA IYGSDAVGGVVNIILKKEYEGAKVSAKYNDPTQGGGEELDLSYLQGFNTDKSQTLLILEYKKAESIQTYQRDGLYSPAYY ENEDGDLTWGAGPYGDAAPSSWSSRITDYSKVYHEDKYVNLSEQQCGELFGDKGIYRPTYKYDCYYDKYADRGLKSAYDR FNLVLNSTYDLNDDWQLYGMVNASYKESTKYKDEKGFGTSIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDT QNTKASLSFGADGNIGEYELDLSWSSSYNKYEKQNHHMVKADALLDIVTFDPNDADPSKWYPNSQMTTEQANMLIADSTK NSDSSLHQFQAVFAGDLMELPAGTAGFATTAEWARESYEDTLDDVTSSGGLIGMGGTGGKGDRDRVAVAGELQIPLLANI TGIRSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPIDEVMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDE IYEDDYRSITQGNLNLEEEKGEYWNFGIVANITDNADITVDWWNIELDGAVKTISTDEMLADPSYYQTGNYTSCEEMDRV GYLTEYDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGDFKFKVAASYLIKKEYQERIDSEIEEQTETDYFP KWKGNASLSWNYEDFSATVAYYYTGEAQGVDLFEYQDENGDDVESMETDTLDAYQIVNITLSYYAPWEGKFTAGVKNLTD EMPPLYDERNDKHNDWPFYEDDNSSYSNTGRSLFIGYSQKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=214, Percent_Identity=30.8411214953271, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788478, Length=138, Percent_Identity=34.0579710144928, Blast_Score=73, Evalue=7e-14, Organism=Escherichia coli, GI1786798, Length=141, Percent_Identity=36.8794326241135, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102427; Mature: 102427
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPKTKLSALSLAISMAALTPTTLFAAEAADKSDAKKEMEKIEVTGSRIKRADFEGVLPV CCCCHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCEE TVITADDIANSGLNSISEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLIN EEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE SRRQASFPSAAGGTSNFVDVSDIPAAAVERIEILTGGASAIYGSDAVGGVVNIILKKEYE CCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCCHHHHHEEEEEECCCC GAKVSAKYNDPTQGGGEELDLSYLQGFNTDKSQTLLILEYKKAESIQTYQRDGLYSPAYY CCEEEEECCCCCCCCCCCEEHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCE ENEDGDLTWGAGPYGDAAPSSWSSRITDYSKVYHEDKYVNLSEQQCGELFGDKGIYRPTY ECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCE KYDCYYDKYADRGLKSAYDRFNLVLNSTYDLNDDWQLYGMVNASYKESTKYKDEKGFGTS EECEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEEECCHHHCCCCCCCCCCCCC IYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDTQNTKASLSFGADGNIGEYEL EECCCCCCCEECCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEE DLSWSSSYNKYEKQNHHMVKADALLDIVTFDPNDADPSKWYPNSQMTTEQANMLIADSTK EEEECCCCHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHCCEEEEECCC NSDSSLHQFQAVFAGDLMELPAGTAGFATTAEWARESYEDTLDDVTSSGGLIGMGGTGGK CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC GDRDRVAVAGELQIPLLANITGIRSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPIDE CCCCEEEEEECEECCCEECCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH VMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDEIYEDDYRSITQGNLNLEEEK HEEEECCCCCCCCCCHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC GEYWNFGIVANITDNADITVDWWNIELDGAVKTISTDEMLADPSYYQTGNYTSCEEMDRV CCEEEEEEEEEECCCCEEEEEEEEEEECCCEEEECCHHHHCCCCCCCCCCCCCHHHHHHC GYLTEYDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGDFKFKVAASYLIKK CCEEECCCCCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH EYQERIDSEIEEQTETDYFPKWKGNASLSWNYEDFSATVAYYYTGEAQGVDLFEYQDENG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCC DDVESMETDTLDAYQIVNITLSYYAPWEGKFTAGVKNLTDEMPPLYDERNDKHNDWPFYE CCHHHHCCCCCCEEEEEEEEEEEECCCCCCCHHCHHHHHHHCCCCCCCCCCCCCCCCCEE DDNSSYSNTGRSLFIGYSQKF CCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure MKPKTKLSALSLAISMAALTPTTLFAAEAADKSDAKKEMEKIEVTGSRIKRADFEGVLPV CCCCHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCEE TVITADDIANSGLNSISEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLIN EEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEE SRRQASFPSAAGGTSNFVDVSDIPAAAVERIEILTGGASAIYGSDAVGGVVNIILKKEYE CCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCCHHHHHEEEEEECCCC GAKVSAKYNDPTQGGGEELDLSYLQGFNTDKSQTLLILEYKKAESIQTYQRDGLYSPAYY CCEEEEECCCCCCCCCCCEEHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCE ENEDGDLTWGAGPYGDAAPSSWSSRITDYSKVYHEDKYVNLSEQQCGELFGDKGIYRPTY ECCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCE KYDCYYDKYADRGLKSAYDRFNLVLNSTYDLNDDWQLYGMVNASYKESTKYKDEKGFGTS EECEEEHHHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEEEECCHHHCCCCCCCCCCCCC IYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDTQNTKASLSFGADGNIGEYEL EECCCCCCCEECCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEE DLSWSSSYNKYEKQNHHMVKADALLDIVTFDPNDADPSKWYPNSQMTTEQANMLIADSTK EEEECCCCHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCCCCHHHCCEEEEECCC NSDSSLHQFQAVFAGDLMELPAGTAGFATTAEWARESYEDTLDDVTSSGGLIGMGGTGGK CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC GDRDRVAVAGELQIPLLANITGIRSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPIDE CCCCEEEEEECEECCCEECCCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH VMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDEIYEDDYRSITQGNLNLEEEK HEEEECCCCCCCCCCHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC GEYWNFGIVANITDNADITVDWWNIELDGAVKTISTDEMLADPSYYQTGNYTSCEEMDRV CCEEEEEEEEEECCCCEEEEEEEEEEECCCEEEECCHHHHCCCCCCCCCCCCCHHHHHHC GYLTEYDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGDFKFKVAASYLIKK CCEEECCCCCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHH EYQERIDSEIEEQTETDYFPKWKGNASLSWNYEDFSATVAYYYTGEAQGVDLFEYQDENG HHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCC DDVESMETDTLDAYQIVNITLSYYAPWEGKFTAGVKNLTDEMPPLYDERNDKHNDWPFYE CCHHHHCCCCCCEEEEEEEEEEEECCCCCCCHHCHHHHHHHCCCCCCCCCCCCCCCCCEE DDNSSYSNTGRSLFIGYSQKF CCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]