| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167622929
Identifier: 167622929
GI number: 167622929
Start: 1218290
End: 1218883
Strand: Direct
Name: 167622929
Synonym: Shal_0990
Alternate gene names: NA
Gene position: 1218290-1218883 (Clockwise)
Preceding gene: 167622928
Following gene: 167622930
Centisome position: 23.31
GC content: 44.11
Gene sequence:
>594_bases GTGAGAACTAAGAGAAAAGTCAGTCAGTCTAAGCGAGAGCCGCAACCTATGAGTCATGAGCATTTTAAAGGTCAGTTTGA AGTCGAGCTAAAGTACCGTTTGGCGTGCAGGGATGCATTCTTAGCGGTACTTAATTCGCTAGAACATGAGATAATGTTTG AAGATAATATCGAGTCAGATTGTTATTTCGATACGCCAACCCAGCAGCTTTTAGCTCAAAATAAGAGTGTCTGCATACGT GAGTGCCAACCGTCAGGTATTAAGCTCTGGATAGTCAAGGGGCCGGAGGCCGATCGCTGTGAAGCGACCAATATCACCGA TACTAATAGCGCTAAAAGCATGCTCAAAACCATGGGTTATCAGGTGTGTTTAGAGATGCAGAAACAGCGAAGTATCTATT TTGTCGGTAAGTTCCATATCACGCTTGATCACTTAGCAGGACTAGGTGATTTTGCCGAGTTTGCCATCATGACCGATGAT GAAAACTCGTTAGAGATTTATCGAGCTGAGCTGGTGGACTTAGCGGCTCACTTTGGACTGACACAAGAGCAGCTTGAACA TAGATCATACCGTAGTATGCAAGAAGCAAAATAG
Upstream 100 bases:
>100_bases AGTATTGGTAATCGTTTTTTTGGCTATTGAAGCTAATAAATCAAGAAACTTTAACTCCGTCGCTACCTACTGAATATAAA AAGGATATTATTGCTGCTGA
Downstream 100 bases:
>100_bases AAGCCATTTACCTTGTATAGAGTATATGTAGAGACATAACACAATGAAAACGATAGGAATGTTAGGCGGTATGAGCTGGG AGTCAACCTCCAGTTATTAC
Product: putative adenylyl cyclase CyaB
Products: 3',5'-cyclic AMP; diphosphate
Alternate protein names: Adenylate Cyclase; Adenylate Cyclase CyaB
Number of amino acids: Translated: 197; Mature: 197
Protein sequence:
>197_residues MRTKRKVSQSKREPQPMSHEHFKGQFEVELKYRLACRDAFLAVLNSLEHEIMFEDNIESDCYFDTPTQQLLAQNKSVCIR ECQPSGIKLWIVKGPEADRCEATNITDTNSAKSMLKTMGYQVCLEMQKQRSIYFVGKFHITLDHLAGLGDFAEFAIMTDD ENSLEIYRAELVDLAAHFGLTQEQLEHRSYRSMQEAK
Sequences:
>Translated_197_residues MRTKRKVSQSKREPQPMSHEHFKGQFEVELKYRLACRDAFLAVLNSLEHEIMFEDNIESDCYFDTPTQQLLAQNKSVCIR ECQPSGIKLWIVKGPEADRCEATNITDTNSAKSMLKTMGYQVCLEMQKQRSIYFVGKFHITLDHLAGLGDFAEFAIMTDD ENSLEIYRAELVDLAAHFGLTQEQLEHRSYRSMQEAK >Mature_197_residues MRTKRKVSQSKREPQPMSHEHFKGQFEVELKYRLACRDAFLAVLNSLEHEIMFEDNIESDCYFDTPTQQLLAQNKSVCIR ECQPSGIKLWIVKGPEADRCEATNITDTNSAKSMLKTMGYQVCLEMQKQRSIYFVGKFHITLDHLAGLGDFAEFAIMTDD ENSLEIYRAELVDLAAHFGLTQEQLEHRSYRSMQEAK
Specific function: Unknown
COG id: COG1437
COG function: function code F; Adenylate cyclase, class 2 (thermophilic)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 4.6.1.1
Molecular weight: Translated: 22779; Mature: 22779
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTKRKVSQSKREPQPMSHEHFKGQFEVELKYRLACRDAFLAVLNSLEHEIMFEDNIESD CCCHHHHHHHHCCCCCCCHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHEEECCCCCCC CYFDTPTQQLLAQNKSVCIRECQPSGIKLWIVKGPEADRCEATNITDTNSAKSMLKTMGY EEECCCHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH QVCLEMQKQRSIYFVGKFHITLDHLAGLGDFAEFAIMTDDENSLEIYRAELVDLAAHFGL HHHHHHHHCCCEEEEEEEEEEHHHHCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCC TQEQLEHRSYRSMQEAK CHHHHHHHHHHHHHHCC >Mature Secondary Structure MRTKRKVSQSKREPQPMSHEHFKGQFEVELKYRLACRDAFLAVLNSLEHEIMFEDNIESD CCCHHHHHHHHCCCCCCCHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHEEECCCCCCC CYFDTPTQQLLAQNKSVCIRECQPSGIKLWIVKGPEADRCEATNITDTNSAKSMLKTMGY EEECCCHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH QVCLEMQKQRSIYFVGKFHITLDHLAGLGDFAEFAIMTDDENSLEIYRAELVDLAAHFGL HHHHHHHHCCCEEEEEEEEEEHHHHCCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCC TQEQLEHRSYRSMQEAK CHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP
Specific reaction: ATP = 3',5'-cyclic AMP + diphosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA