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The map label for this gene is yafC [H]

Identifier: 167622897

GI number: 167622897

Start: 1179218

End: 1180126

Strand: Direct

Name: yafC [H]

Synonym: Shal_0957

Alternate gene names: 167622897

Gene position: 1179218-1180126 (Clockwise)

Preceding gene: 167622895

Following gene: 167622901

Centisome position: 22.56

GC content: 47.19

Gene sequence:

>909_bases
ATGGATCAGTTAGGCGCAATGAGGGCATTTATTCGAGTGGTACAAAGTGGCAGTTTTTCTGCCGCAGCCAGAGAGCAAAA
TACGACTCAGGCGACAATCAGCAAGAAAGTCGCTGCGCTGGAGAGTCAGCTAGGGGCTAAATTACTCACCCGCAGTAGCA
GAGAGAATTCGATGACCGAAGTCGGCGCCGTATATTATGAAAGTTGTGTGGCGATTATCGGTGAACTTGATGAAGCAGAG
GCGCAAGTACGATCGCAACAGGCATCGCCTAAAGGTGTGCTTCGCGTGGCGGCTCCGATTGTATTTGGTTGCCAATTTAT
CGCGCCATTTTTGAGTCATTTTCTCGAGTGTTACCCAGAGATAAAAGTGGATCTGATGCTCAGTGATAAGCACGTGGACT
TGATTGCTGAGGGAGTCGACGTGGCTATTCGAGCTAAGCAGCTTGAGGACTCATCTCTAATCGCAAGACATCTATTCGAT
AACCCGATGGTTGTGGTTGCATCGCCAGATTACTTAAAGCGTTTTGGCGAGCCGAAAGAGCCGCAGGAACTAAGATCCCA
TAACTGTATCGTCTATTCGATGTTAAAGTCGGTCAATATATGGCACTTTGAGCAAGCTAAAGAAAGCGATGATAAGATTT
CTGTGCCAGTGAGTGGTAATTGTCGCTGTGATAATGGTGAGGCGATATTACAGCTCGCCCTCGACGGCTTAGGCGTTGTT
CAGCTACCTATATGGATGGTCGATGAGCATGTAAAAGTAGGACGGCTCAAAGTGTTACTGTCCAATTACATTGCTAAACC
ACTGCCTTTTAATGCTATCTATCCTCAGAGCCGCTATGTGCCGTTAAAAGCTCGCTGCTTTATTGATTACCTTAAGCAGC
GTCTAGCCGAAAGCCCCAACTATCGGTAA

Upstream 100 bases:

>100_bases
AATGAATAGTGTTAATTCCATATTGGAATATAAATAAAACAAAGACCTGTTCGTCACTAAGCATACCTGCATGGGTAAAG
GCTTAAATTCTGGAGGTTAG

Downstream 100 bases:

>100_bases
GCGAAAGCCAACACAGAAGTGTTGGCTTTTCAGTTATTAAAAGTAAAATAAAGCTAGGCTAGCTTTATTTTACCCTGTTT
CAATTAAGAGTAAGTACCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTEVGAVYYESCVAIIGELDEAE
AQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPEIKVDLMLSDKHVDLIAEGVDVAIRAKQLEDSSLIARHLFD
NPMVVVASPDYLKRFGEPKEPQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVV
QLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAESPNYR

Sequences:

>Translated_302_residues
MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTEVGAVYYESCVAIIGELDEAE
AQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPEIKVDLMLSDKHVDLIAEGVDVAIRAKQLEDSSLIARHLFD
NPMVVVASPDYLKRFGEPKEPQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVV
QLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAESPNYR
>Mature_302_residues
MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTEVGAVYYESCVAIIGELDEAE
AQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPEIKVDLMLSDKHVDLIAEGVDVAIRAKQLEDSSLIARHLFD
NPMVVVASPDYLKRFGEPKEPQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVV
QLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAESPNYR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=35.3741496598639, Blast_Score=194, Evalue=4e-51,
Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=33.6700336700337, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=32.6599326599327, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=31.7567567567568, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=29.1946308724832, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30.3333333333333, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=26.8456375838926, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=29.6875, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790011, Length=306, Percent_Identity=27.1241830065359, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788706, Length=242, Percent_Identity=24.3801652892562, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=24.496644295302, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI145693105, Length=193, Percent_Identity=25.3886010362694, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790262, Length=244, Percent_Identity=24.1803278688525, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=120, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=29.9270072992701, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33645; Mature: 33645

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTE
CCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VGAVYYESCVAIIGELDEAEAQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPE
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKVDLMLSDKHVDLIAEGVDVAIRAKQLEDSSLIARHLFDNPMVVVASPDYLKRFGEPKE
CEEEEEECCCCHHHHHCCCCCEEEHHHCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCCC
PQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVV
HHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCEEEECCCCCCEECCCHHHHHHHHCCCCEE
QLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAESPN
EEHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
YR
CC
>Mature Secondary Structure
MDQLGAMRAFIRVVQSGSFSAAAREQNTTQATISKKVAALESQLGAKLLTRSSRENSMTE
CCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VGAVYYESCVAIIGELDEAEAQVRSQQASPKGVLRVAAPIVFGCQFIAPFLSHFLECYPE
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKVDLMLSDKHVDLIAEGVDVAIRAKQLEDSSLIARHLFDNPMVVVASPDYLKRFGEPKE
CEEEEEECCCCHHHHHCCCCCEEEHHHCCCHHHHHHHHCCCCEEEEECCHHHHHCCCCCC
PQELRSHNCIVYSMLKSVNIWHFEQAKESDDKISVPVSGNCRCDNGEAILQLALDGLGVV
HHHHHHCCHHHHHHHHHCCCEEEHHHCCCCCEEEECCCCCCEECCCHHHHHHHHCCCCEE
QLPIWMVDEHVKVGRLKVLLSNYIAKPLPFNAIYPQSRYVPLKARCFIDYLKQRLAESPN
EEHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
YR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]