| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yciR [C]
Identifier: 167622751
GI number: 167622751
Start: 1012995
End: 1015454
Strand: Direct
Name: yciR [C]
Synonym: Shal_0811
Alternate gene names: 167622751
Gene position: 1012995-1015454 (Clockwise)
Preceding gene: 167622750
Following gene: 167622753
Centisome position: 19.38
GC content: 46.38
Gene sequence:
>2460_bases ATGCTGGCACGAATAGCCCAGTGCGGGGCCGCGTTATTCCAGATAGATCAAACCGATAAGTTTGTTGCTATCGGCTATGC CAATATTAGCCTTGAGCAGCTAAAAACTCAGCAGCTTAGTCCTGAGCTTTTCTATCACGATAGCTATAGCCAATTAACTG GAACTGGCGAGACAAGCTCTTATTTCGACAGTCATATTCGGTGTCTGCTACCCATTAATTGGCCTGCGGGTGCCTTGTTT GGCTATCTCTGTATCACCCCTTCAAATAAAGTTTCTACTCTTTCAGTATGCGAGCTACAGGCCGAGATCCGGCACTTATT AAAAGTATGTGCTGACAGCATAGAGCAGGACTTGGGTAAAATTTATCGTGATTTTAAATGCAAACAAAGTTCGGTTCGCG ATGTGGGTCACCAAGCGAGCCCTGTGGGTTTGCAAACGTTTATCGATTGCATGAAAGAGCATGTTTGGATGAAGGATACA TCTGGACGCTACATGATGGTTAATCACAGTGTTGAGCTTGCATGGAATCGTTCTCGAGAGCAGATCTTAAATTTTACCGA TGATGAGCTATTTGAGCCGCGTTTAGCAAAGCATTTTATCGCCAGCGATATGGAGTCTATACGCAAAGGCGTGGAAGTAT CGGCCGGAGAGTGTGAAGGCTTGGACATTGGCGATGTTGACTCTTGGCTCGAGACAACCAAAGTCCCTATTATGGATGAT GATGGAGAGTTAACCGGGGTGCTCGGCATTTCACGTAATATCTCATCTCATAAGGCGGCGAAAGATCAGCTCGAGCTGGC CTCACGAGTGTTTGAGAACTCGGTAGAGGGTGTGATTATTACCGATGTTGATGGTGCGGTTATTGATGCCCACGGTGCCT ATAAAGAGATCACTGGATATGAAAAAGAGGAACTTCTTGGAAAAAATCCAAGGGTGTTTAATTCAGGCCGCCATGATAAA GTTTTTTTTACCAAGTTATGGAGTGACTTACTGACCAAAGGCAAGTGGCACGGTGAGATCTGGAATCGTCGTAAAAACGG CGCTATTTTTCCGCAGATGCTCAATATCAGTGCTGTCTACGATGACGAGCATCAGATCCGCTATTTTGTCGCAGTGTTTA ATGATATTTCGGCACAAAAACAGAGTGAAGCCGAACTTGCTAGAGTCGCATTTCACGATCCGTTGACTAAACTGCCCAAT CGCATGGCGCTTAATACAGGCTTGGAGCAAGAGCTAAAACAGGCAAGCCATAGCAATACACGTCTTGGTTTAGTCTATAT CGATGTCGATCTCTTTAAGCAGATCAATGAAAGCTATGGCCACCCCATGGGGGATGAAGTCCTGCTTGAGCTGAGTCGCC GTTTTAATTTTGGCTTAGACAATTTAGCTACAGTTGCTCGTTTGGGCAGTGATGAGTTTGCGGTGATCTTACCCAATATC GATAGTAACGACAGGTTACTGCTTAGTATTAATAAGCTTCGAAAAATGTTCGATCAACCCTTTCTGCTGGCGGAGCATGG GCAGGCGCGCTTGACTGCGAGTATGGGGGTCGCGATTTATCCCGATGATGCACAAGACTCCAGCGGATTACTGGTCAATG CAGAAGTGGCGATGCACAGGGTTAAACAAGATGGACGAAACAGTTATGCCTTTTATACCGAGTCATTGACTCAAGAGTCA GTTGCTAAACTCAAGTTACAGAGTGCACTGCATGATGCGCTAGAGCTGAATGCATTTCATCTCGAGTATCAGCCAAAGAT CAGTTTTCGTACCGGGGACGTGGTTGGGTTTGAGGCGTTACTACGTTGGGTCGATCCTGTTCTTGGCAGCATTTCTCCCG ATATCTTTATTCCATTGGCCGAGAAGATCGGTTTAATTCAAGATATTGGACGCTGGGTGTTAAAGCGTGCTTGTGAGCAG GGGCAACGCTGGCGTAAGCAAGGGGTGAGTTTTGGCCGAATTGCGGTGAATGTCGCCGGCCAGCAGATTCAACGCAGTAG CTTTGTTGATGAGGTCGCTGAGATCCTCAAACAAACGGGGCTGCCAGCGAGTAGCTTAGAGCTTGAGGTGACAGAAAGCT GCATGATGTCCAATCCTGAGCTGGTTAGCCAAGATCTAGCGAAACTAGGTCAGATGGGCATCGAGTTGTCGATAGATGAC TTTGGCACAGGCTATTCGTCACTCAGTTACCTTAAAAAACTGCCGCTCCATAAGCTTAAAATCGATCAGTCTTTTGTCGC TGGCTTACCATTTGATACCCACAATACCGCGATTGCCAAGGCTATCATTGCGATGGGGCATGCGTTGAATTTGCAAGTGG TCGCCGAAGGGGTAGAAACCCAAGCCCAAGCAGACTTCTTAAAGGACAATCACTGCGATCACGCTCAAGGTTATTTTTAT AGTAAGCCTAAATTAGTCGAAGAGCTGACAGCGTTTTTAATTGCTGACGACAGAGTTTAA
Upstream 100 bases:
>100_bases AATACTTTTTGAATCACAATGGAAAGATTAATAGGACATAGAGTTGATTAATATCAAAATAACGCAAGCACAACGGGGTG AATGGCAGCAATCTATCGAT
Downstream 100 bases:
>100_bases TCGCCATCCTTATAGGTTGTTAAGTCGTAATACCTAAAGCCGTTGCTATCGATGCTCTGTATCGATAGCAAAACCGGTCA CAGGGATAACCTCGCCAGGT
Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 819; Mature: 819
Protein sequence:
>819_residues MLARIAQCGAALFQIDQTDKFVAIGYANISLEQLKTQQLSPELFYHDSYSQLTGTGETSSYFDSHIRCLLPINWPAGALF GYLCITPSNKVSTLSVCELQAEIRHLLKVCADSIEQDLGKIYRDFKCKQSSVRDVGHQASPVGLQTFIDCMKEHVWMKDT SGRYMMVNHSVELAWNRSREQILNFTDDELFEPRLAKHFIASDMESIRKGVEVSAGECEGLDIGDVDSWLETTKVPIMDD DGELTGVLGISRNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGYEKEELLGKNPRVFNSGRHDK VFFTKLWSDLLTKGKWHGEIWNRRKNGAIFPQMLNISAVYDDEHQIRYFVAVFNDISAQKQSEAELARVAFHDPLTKLPN RMALNTGLEQELKQASHSNTRLGLVYIDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNI DSNDRLLLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHRVKQDGRNSYAFYTESLTQES VAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEALLRWVDPVLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQ GQRWRKQGVSFGRIAVNVAGQQIQRSSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDD FGTGYSSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVETQAQADFLKDNHCDHAQGYFY SKPKLVEELTAFLIADDRV
Sequences:
>Translated_819_residues MLARIAQCGAALFQIDQTDKFVAIGYANISLEQLKTQQLSPELFYHDSYSQLTGTGETSSYFDSHIRCLLPINWPAGALF GYLCITPSNKVSTLSVCELQAEIRHLLKVCADSIEQDLGKIYRDFKCKQSSVRDVGHQASPVGLQTFIDCMKEHVWMKDT SGRYMMVNHSVELAWNRSREQILNFTDDELFEPRLAKHFIASDMESIRKGVEVSAGECEGLDIGDVDSWLETTKVPIMDD DGELTGVLGISRNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGYEKEELLGKNPRVFNSGRHDK VFFTKLWSDLLTKGKWHGEIWNRRKNGAIFPQMLNISAVYDDEHQIRYFVAVFNDISAQKQSEAELARVAFHDPLTKLPN RMALNTGLEQELKQASHSNTRLGLVYIDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNI DSNDRLLLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHRVKQDGRNSYAFYTESLTQES VAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEALLRWVDPVLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQ GQRWRKQGVSFGRIAVNVAGQQIQRSSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDD FGTGYSSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVETQAQADFLKDNHCDHAQGYFY SKPKLVEELTAFLIADDRV >Mature_819_residues MLARIAQCGAALFQIDQTDKFVAIGYANISLEQLKTQQLSPELFYHDSYSQLTGTGETSSYFDSHIRCLLPINWPAGALF GYLCITPSNKVSTLSVCELQAEIRHLLKVCADSIEQDLGKIYRDFKCKQSSVRDVGHQASPVGLQTFIDCMKEHVWMKDT SGRYMMVNHSVELAWNRSREQILNFTDDELFEPRLAKHFIASDMESIRKGVEVSAGECEGLDIGDVDSWLETTKVPIMDD DGELTGVLGISRNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGYEKEELLGKNPRVFNSGRHDK VFFTKLWSDLLTKGKWHGEIWNRRKNGAIFPQMLNISAVYDDEHQIRYFVAVFNDISAQKQSEAELARVAFHDPLTKLPN RMALNTGLEQELKQASHSNTRLGLVYIDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNI DSNDRLLLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHRVKQDGRNSYAFYTESLTQES VAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEALLRWVDPVLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQ GQRWRKQGVSFGRIAVNVAGQQIQRSSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDD FGTGYSSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVETQAQADFLKDNHCDHAQGYFY SKPKLVEELTAFLIADDRV
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MHYT domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=637, Percent_Identity=28.8854003139717, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=34.7826086956522, Blast_Score=258, Evalue=8e-70, Organism=Escherichia coli, GI226510982, Length=422, Percent_Identity=29.8578199052133, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI87081845, Length=269, Percent_Identity=34.2007434944238, Blast_Score=145, Evalue=9e-36, Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=35.2226720647773, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=34.5238095238095, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=35.1239669421488, Blast_Score=132, Evalue=1e-31, Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=33.4763948497854, Blast_Score=131, Evalue=2e-31, Organism=Escherichia coli, GI1787055, Length=394, Percent_Identity=25.6345177664975, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1786507, Length=267, Percent_Identity=32.9588014981273, Blast_Score=126, Evalue=5e-30, Organism=Escherichia coli, GI1788849, Length=467, Percent_Identity=26.5524625267666, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI87082096, Length=429, Percent_Identity=25.1748251748252, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1787802, Length=207, Percent_Identity=33.8164251207729, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1788381, Length=322, Percent_Identity=23.6024844720497, Blast_Score=91, Evalue=3e-19, Organism=Escherichia coli, GI1788956, Length=143, Percent_Identity=37.7622377622378, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=33.9393939393939, Blast_Score=86, Evalue=8e-18, Organism=Escherichia coli, GI87081881, Length=334, Percent_Identity=27.2455089820359, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI87081977, Length=168, Percent_Identity=32.1428571428571, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=30.0613496932515, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789650, Length=428, Percent_Identity=19.8598130841121, Blast_Score=71, Evalue=4e-13, Organism=Escherichia coli, GI1787262, Length=297, Percent_Identity=22.8956228956229, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]
EC number: NA
Molecular weight: Translated: 91510; Mature: 91510
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLARIAQCGAALFQIDQTDKFVAIGYANISLEQLKTQQLSPELFYHDSYSQLTGTGETSS CCCHHHHHHHHHEEECCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCHHHHCCCCCCHH YFDSHIRCLLPINWPAGALFGYLCITPSNKVSTLSVCELQAEIRHLLKVCADSIEQDLGK HHHCCCEEEEECCCCHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRDFKCKQSSVRDVGHQASPVGLQTFIDCMKEHVWMKDTSGRYMMVNHSVELAWNRSRE HHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHCEEECCCCCEEEEECCEEEEECCCHH QILNFTDDELFEPRLAKHFIASDMESIRKGVEVSAGECEGLDIGDVDSWLETTKVPIMDD HHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEECC DGELTGVLGISRNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGY CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCHHHHCCC EKEELLGKNPRVFNSGRHDKVFFTKLWSDLLTKGKWHGEIWNRRKNGAIFPQMLNISAVY CHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHCEEEEE DDEHQIRYFVAVFNDISAQKQSEAELARVAFHDPLTKLPNRMALNTGLEQELKQASHSNT CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHCCHHHHHHHHCCCCC RLGLVYIDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNI EEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC DSNDRLLLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHR CCCCEEEEEHHHHHHHHCCCCEEECCCCEEEEEECCEEECCCCCCCCCCEEEEHHHHHHH VKQDGRNSYAFYTESLTQESVAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEAL HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCHHHHHHH LRWVDPVLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQGQRWRKQGVSFGRIAVNVAG HHHHHHHHCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH QQIQRSSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDD HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHCCCEEEECC FGTGYSSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVET CCCCHHHHHHHHHCCCHHEECCCHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH QAQADFLKDNHCDHAQGYFYSKPKLVEELTAFLIADDRV HHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MLARIAQCGAALFQIDQTDKFVAIGYANISLEQLKTQQLSPELFYHDSYSQLTGTGETSS CCCHHHHHHHHHEEECCCCCEEEEEEECCCHHHHHHHHCCCCEEEECCHHHHCCCCCCHH YFDSHIRCLLPINWPAGALFGYLCITPSNKVSTLSVCELQAEIRHLLKVCADSIEQDLGK HHHCCCEEEEECCCCHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IYRDFKCKQSSVRDVGHQASPVGLQTFIDCMKEHVWMKDTSGRYMMVNHSVELAWNRSRE HHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHCEEECCCCCEEEEECCEEEEECCCHH QILNFTDDELFEPRLAKHFIASDMESIRKGVEVSAGECEGLDIGDVDSWLETTKVPIMDD HHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCEECC DGELTGVLGISRNISSHKAAKDQLELASRVFENSVEGVIITDVDGAVIDAHGAYKEITGY CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCHHHHCCC EKEELLGKNPRVFNSGRHDKVFFTKLWSDLLTKGKWHGEIWNRRKNGAIFPQMLNISAVY CHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHCEEEEE DDEHQIRYFVAVFNDISAQKQSEAELARVAFHDPLTKLPNRMALNTGLEQELKQASHSNT CCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHCCHHHHHHHHCCCCC RLGLVYIDVDLFKQINESYGHPMGDEVLLELSRRFNFGLDNLATVARLGSDEFAVILPNI EEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC DSNDRLLLSINKLRKMFDQPFLLAEHGQARLTASMGVAIYPDDAQDSSGLLVNAEVAMHR CCCCEEEEEHHHHHHHHCCCCEEECCCCEEEEEECCEEECCCCCCCCCCEEEEHHHHHHH VKQDGRNSYAFYTESLTQESVAKLKLQSALHDALELNAFHLEYQPKISFRTGDVVGFEAL HHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCHHHHHHH LRWVDPVLGSISPDIFIPLAEKIGLIQDIGRWVLKRACEQGQRWRKQGVSFGRIAVNVAG HHHHHHHHCCCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECH QQIQRSSFVDEVAEILKQTGLPASSLELEVTESCMMSNPELVSQDLAKLGQMGIELSIDD HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHCCCEEEECC FGTGYSSLSYLKKLPLHKLKIDQSFVAGLPFDTHNTAIAKAIIAMGHALNLQVVAEGVET CCCCHHHHHHHHHCCCHHEECCCHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH QAQADFLKDNHCDHAQGYFYSKPKLVEELTAFLIADDRV HHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]