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The map label for this gene is cph2 [H]

Identifier: 167622741

GI number: 167622741

Start: 996660

End: 997784

Strand: Direct

Name: cph2 [H]

Synonym: Shal_0801

Alternate gene names: 167622741

Gene position: 996660-997784 (Clockwise)

Preceding gene: 167622740

Following gene: 167622745

Centisome position: 19.07

GC content: 42.04

Gene sequence:

>1125_bases
ATGATAAGTGAAGGGATTCCTTTGAAGTCATATCAGTACCAACCTCAGTTGAAGAGAGAAGCCTTTACGATTTTAAAGCG
CGGTATTCTGTGGGCAACCTATGTCAGCTGCGTACTATTATCTGTTGTACTGCTAAATAGCTATTTTTTTGATGGTTTTT
ACTTTGATCTTCATTCATTACAATTTAAGTTTATCCCGCTATTTATAGTGCTCTTACTAGGTTTAATAACGATTAAGCTC
GCTGGATTTGAAAACGTGGGAGTAAAACAAACGTATCTCTATTTAATCTTGTTGGTTAGTGGTTGGAGTTATGTGCTTTT
GGGTTTAGCTTTGCTATCTGACCAGAACATGCCGGGCATTGAGTCTTTAGCCGATGTACTGGTGTTAGTGTTTGCACTGG
CGCTGTTTCCTAATCGAAATGTGATGGCTTTCGCCATATTTCCTTTTTTAGCCTTTAGCGCTGTTTATCACTCTATGCAG
TATTCTCAGGTGCTGATTTACCCGCTGACTAAATTTTTATGTTTTTTGGGCATCATATTATCAGGCCAAAAAATTATTTC
GGGTTGGTTTTTCAAAGCGGTGAGCCGTAATATTGAAAAAAAGAAATTGTTACAGCAGTTTAAGCGTTTAGCCATGATTG
ATGGCTTGACCAATATCAGTAATCGTCGCCATTTTGACGAGGTGCTAACCCAAGAGATAAAGGCATCACTTAGAAATAAT
AAACCGTTGTCTATCATCATGGTCGATGTGGACTTCTTTAAGCCGCTTAACGACAGTCTTGGCCACCAAGTGGGTGATAA
ATATTTAAAGAGGATCGCAGGTGTATTAAATAGCGCACTCGAACGGCCAAGGGATCTGGTTGCCCGCTACGGCGGAGAGG
AGTTTGTGATTGCACTGCCAGATACTGATCTAAGCGGTGCCACTCAAGTCGCCGAAAAGATTAAACAGGCAATAGCCGAT
ACAGAGCTTGCGCACCCTGGCTCAGGAGTCTCAGACTTTATTACTGTTTCTCAAGGCATTGCGCAGTGGCACGAGGGGAT
GGAACCAGCTCAGTTGCTAGAGACCGCCGACAGTTTGTTATATCAAGCCAAGTCAGCGGGTAGAGATTGTTACCTTTCAG
AGTAA

Upstream 100 bases:

>100_bases
GATGAGTCTAGCCGAGATAATGTTGCAGCCTAAAGGGATTACTCGTTAATATAAAGCCAGCAGATGCTGGCTTTTTTATT
GAGCTAGTCACAGAATAATA

Downstream 100 bases:

>100_bases
GGCTCTTTAGTCCCCCCTTCACTGTAAAAGCGCTCCCAGAGTAGGGATCTCTCTGAGAGGAGCTTGAGTGTGAAACCGTC
GCTTAGGCCGTAGTATTAAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MISEGIPLKSYQYQPQLKREAFTILKRGILWATYVSCVLLSVVLLNSYFFDGFYFDLHSLQFKFIPLFIVLLLGLITIKL
AGFENVGVKQTYLYLILLVSGWSYVLLGLALLSDQNMPGIESLADVLVLVFALALFPNRNVMAFAIFPFLAFSAVYHSMQ
YSQVLIYPLTKFLCFLGIILSGQKIISGWFFKAVSRNIEKKKLLQQFKRLAMIDGLTNISNRRHFDEVLTQEIKASLRNN
KPLSIIMVDVDFFKPLNDSLGHQVGDKYLKRIAGVLNSALERPRDLVARYGGEEFVIALPDTDLSGATQVAEKIKQAIAD
TELAHPGSGVSDFITVSQGIAQWHEGMEPAQLLETADSLLYQAKSAGRDCYLSE

Sequences:

>Translated_374_residues
MISEGIPLKSYQYQPQLKREAFTILKRGILWATYVSCVLLSVVLLNSYFFDGFYFDLHSLQFKFIPLFIVLLLGLITIKL
AGFENVGVKQTYLYLILLVSGWSYVLLGLALLSDQNMPGIESLADVLVLVFALALFPNRNVMAFAIFPFLAFSAVYHSMQ
YSQVLIYPLTKFLCFLGIILSGQKIISGWFFKAVSRNIEKKKLLQQFKRLAMIDGLTNISNRRHFDEVLTQEIKASLRNN
KPLSIIMVDVDFFKPLNDSLGHQVGDKYLKRIAGVLNSALERPRDLVARYGGEEFVIALPDTDLSGATQVAEKIKQAIAD
TELAHPGSGVSDFITVSQGIAQWHEGMEPAQLLETADSLLYQAKSAGRDCYLSE
>Mature_374_residues
MISEGIPLKSYQYQPQLKREAFTILKRGILWATYVSCVLLSVVLLNSYFFDGFYFDLHSLQFKFIPLFIVLLLGLITIKL
AGFENVGVKQTYLYLILLVSGWSYVLLGLALLSDQNMPGIESLADVLVLVFALALFPNRNVMAFAIFPFLAFSAVYHSMQ
YSQVLIYPLTKFLCFLGIILSGQKIISGWFFKAVSRNIEKKKLLQQFKRLAMIDGLTNISNRRHFDEVLTQEIKASLRNN
KPLSIIMVDVDFFKPLNDSLGHQVGDKYLKRIAGVLNSALERPRDLVARYGGEEFVIALPDTDLSGATQVAEKIKQAIAD
TELAHPGSGVSDFITVSQGIAQWHEGMEPAQLLETADSLLYQAKSAGRDCYLSE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=247, Percent_Identity=28.7449392712551, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=38.6363636363636, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=32.3529411764706, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=37.888198757764, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=29.3478260869565, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=31.6091954022989, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=29.8850574712644, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=30.8176100628931, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=29.585798816568, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=27.4853801169591, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87081977, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787056, Length=181, Percent_Identity=30.3867403314917, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=117, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 41959; Mature: 41959

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCCC
>Mature Secondary Structure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HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]