Click here to switch to the map view.

The map label for this gene is glpD [H]

Identifier: 167622745

GI number: 167622745

Start: 1001115

End: 1002290

Strand: Direct

Name: glpD [H]

Synonym: Shal_0805

Alternate gene names: 167622745

Gene position: 1001115-1002290 (Clockwise)

Preceding gene: 167622741

Following gene: 167622746

Centisome position: 19.15

GC content: 48.55

Gene sequence:

>1176_bases
ATGGCGACGGTCGATCTTCTCGTCATTGGTGGTGGGATCAATGGAGCGGGTATCGCTCAGTGCGCAGCTGCAGCTGGCTA
TAGTGTATTGCTGTTAGAGAAAGACACCATTGCGGGGCAGACGTCGGCTAACTCCAGTAAACTCATCCACGGTGGGCTGC
GCTATCTCGAATCTGGCCAACTTCCCTTGGTAAGAAAGTCTCTGGCCGAGAGAAAAGCCTTGCTTAAGCTGGCTCCCTCG
TTAGTGAATCCAATCCCATTTTATATTCCCGTGTATGACACCAGCCATCGTAGTTCGTGGGCGATAAGAGCGGGGCTTAG
TTTGTATGCCGTGCTCAGTGATTTCGATGAGCTGGGGCTGTTTAAATCAGTTCCCTCTGTAGATTGGTCGAAAATTAAAG
GACTCAAACTTAAGGGGCTAAAAGCCGTTTACCAATATTGGGATGCGCAAACAGATGACAAGCGACTGACACAAGCCGTG
ATAAAAAATGCTCGTGCCTTAGGGGCGCATGTGATTGAGCATGCTCAATGTACGCATATCGAGCATTTGCCGAGCCATTG
TGTGGTGCGCTATCAAACGGAAGAAATAGCGCAAGAGGTAGAAGCGCTGGCAGTAGTGAATGCGGCGGGTCCATGGGTGA
ATCAGGTGCTTGAAAATGTGTTTCCGCCTATCGCAGCAGAGCCTATCGAGTGGGTGCAGGGCAGTCATCTGCTGCTCGAT
ATTCCAGCTAATGATGGCATCCTTTATCTGGAGTCTTGCTTCGACAAACGGGTTATTTTTGTGATGCCTTGGAATGGACA
AACATTAATTGGTACGACTGAGGTAGTGCTTGATGAATTAAGCGACAAACCTCAGATCACCGCCGCAGAGGAAGAGTATT
TGCTTGGCATTTATCAACACTATTTTGCCTGTCTGGGTGATATAGACGCTTTGAAGGCGCGGGTTGTCGATAGTTTTTGT
GGTGTGAGAGTGCTACCTAAACTGTCGGGCAATGCGTTTGACCAGCCGCGAGATACATTGCAAAAAAGCCAGCTTAGCCA
TCCTAAGCTATTAAGTCTTTACGGCGGTAAACTCACGACCTATAGAACCACGGCAACCGAAGTGATTGAGTGGGTTGAAG
ATGCCATTGGTGAGCGACCATCTTTAGCCAATTTCGATAAACTGCAACTCGATTAA

Upstream 100 bases:

>100_bases
AGCTCTAGAAGATATTTGTGGCGTAGTTTGCTCTGTTCATCATGGTGCAATTATTGGGCTATGCATGGTAATGAGTGATC
AATCTAATCAAGGAGCAAAA

Downstream 100 bases:

>100_bases
TTAACCTTGAATGCGATTTTAAAAAGATAGCGGCAGTAGCGAGGTGATTGAAATGATGCCAAGCTCATGAGTTTCATTAT
TCTGTAACCTTAGTGTCATA

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MATVDLLVIGGGINGAGIAQCAAAAGYSVLLLEKDTIAGQTSANSSKLIHGGLRYLESGQLPLVRKSLAERKALLKLAPS
LVNPIPFYIPVYDTSHRSSWAIRAGLSLYAVLSDFDELGLFKSVPSVDWSKIKGLKLKGLKAVYQYWDAQTDDKRLTQAV
IKNARALGAHVIEHAQCTHIEHLPSHCVVRYQTEEIAQEVEALAVVNAAGPWVNQVLENVFPPIAAEPIEWVQGSHLLLD
IPANDGILYLESCFDKRVIFVMPWNGQTLIGTTEVVLDELSDKPQITAAEEEYLLGIYQHYFACLGDIDALKARVVDSFC
GVRVLPKLSGNAFDQPRDTLQKSQLSHPKLLSLYGGKLTTYRTTATEVIEWVEDAIGERPSLANFDKLQLD

Sequences:

>Translated_391_residues
MATVDLLVIGGGINGAGIAQCAAAAGYSVLLLEKDTIAGQTSANSSKLIHGGLRYLESGQLPLVRKSLAERKALLKLAPS
LVNPIPFYIPVYDTSHRSSWAIRAGLSLYAVLSDFDELGLFKSVPSVDWSKIKGLKLKGLKAVYQYWDAQTDDKRLTQAV
IKNARALGAHVIEHAQCTHIEHLPSHCVVRYQTEEIAQEVEALAVVNAAGPWVNQVLENVFPPIAAEPIEWVQGSHLLLD
IPANDGILYLESCFDKRVIFVMPWNGQTLIGTTEVVLDELSDKPQITAAEEEYLLGIYQHYFACLGDIDALKARVVDSFC
GVRVLPKLSGNAFDQPRDTLQKSQLSHPKLLSLYGGKLTTYRTTATEVIEWVEDAIGERPSLANFDKLQLD
>Mature_390_residues
ATVDLLVIGGGINGAGIAQCAAAAGYSVLLLEKDTIAGQTSANSSKLIHGGLRYLESGQLPLVRKSLAERKALLKLAPSL
VNPIPFYIPVYDTSHRSSWAIRAGLSLYAVLSDFDELGLFKSVPSVDWSKIKGLKLKGLKAVYQYWDAQTDDKRLTQAVI
KNARALGAHVIEHAQCTHIEHLPSHCVVRYQTEEIAQEVEALAVVNAAGPWVNQVLENVFPPIAAEPIEWVQGSHLLLDI
PANDGILYLESCFDKRVIFVMPWNGQTLIGTTEVVLDELSDKPQITAAEEEYLLGIYQHYFACLGDIDALKARVVDSFCG
VRVLPKLSGNAFDQPRDTLQKSQLSHPKLLSLYGGKLTTYRTTATEVIEWVEDAIGERPSLANFDKLQLD

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=388, Percent_Identity=29.1237113402062, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI285002231, Length=388, Percent_Identity=29.1237113402062, Blast_Score=135, Evalue=5e-32,
Organism=Escherichia coli, GI2367226, Length=386, Percent_Identity=34.9740932642487, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI1788574, Length=374, Percent_Identity=26.4705882352941, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509253, Length=391, Percent_Identity=29.156010230179, Blast_Score=128, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI115534726, Length=388, Percent_Identity=29.639175257732, Blast_Score=109, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6322036, Length=409, Percent_Identity=29.3398533007335, Blast_Score=124, Evalue=3e-29,
Organism=Drosophila melanogaster, GI161077125, Length=415, Percent_Identity=30.1204819277108, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24653942, Length=415, Percent_Identity=30.1204819277108, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24653944, Length=415, Percent_Identity=30.1204819277108, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI20130025, Length=415, Percent_Identity=30.1204819277108, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24586295, Length=382, Percent_Identity=25.9162303664921, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19921278, Length=404, Percent_Identity=26.2376237623762, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 42890; Mature: 42758

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS00978 FAD_G3PDH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVDLLVIGGGINGAGIAQCAAAAGYSVLLLEKDTIAGQTSANSSKLIHGGLRYLESGQ
CCEEEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
LPLVRKSLAERKALLKLAPSLVNPIPFYIPVYDTSHRSSWAIRAGLSLYAVLSDFDELGL
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHCHHHHHHHHHHHHHHH
FKSVPSVDWSKIKGLKLKGLKAVYQYWDAQTDDKRLTQAVIKNARALGAHVIEHAQCTHI
HHCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHLPSHCVVRYQTEEIAQEVEALAVVNAAGPWVNQVLENVFPPIAAEPIEWVQGSHLLLD
HHCCCHHEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCCEEEEE
IPANDGILYLESCFDKRVIFVMPWNGQTLIGTTEVVLDELSDKPQITAAEEEYLLGIYQH
ECCCCCEEEEEHHHCCCEEEEECCCCCEEECHHHHHHHHHCCCCCEEECHHHHHHHHHHH
YFACLGDIDALKARVVDSFCGVRVLPKLSGNAFDQPRDTLQKSQLSHPKLLSLYGGKLTT
HHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHCCCEEEE
YRTTATEVIEWVEDAIGERPSLANFDKLQLD
EECHHHHHHHHHHHHHCCCCCCCCCCCEECC
>Mature Secondary Structure 
ATVDLLVIGGGINGAGIAQCAAAAGYSVLLLEKDTIAGQTSANSSKLIHGGLRYLESGQ
CEEEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
LPLVRKSLAERKALLKLAPSLVNPIPFYIPVYDTSHRSSWAIRAGLSLYAVLSDFDELGL
CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEHHHCHHHHHHHHHHHHHHH
FKSVPSVDWSKIKGLKLKGLKAVYQYWDAQTDDKRLTQAVIKNARALGAHVIEHAQCTHI
HHCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHLPSHCVVRYQTEEIAQEVEALAVVNAAGPWVNQVLENVFPPIAAEPIEWVQGSHLLLD
HHCCCHHEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCCCCEEEEE
IPANDGILYLESCFDKRVIFVMPWNGQTLIGTTEVVLDELSDKPQITAAEEEYLLGIYQH
ECCCCCEEEEEHHHCCCEEEEECCCCCEEECHHHHHHHHHCCCCCEEECHHHHHHHHHHH
YFACLGDIDALKARVVDSFCGVRVLPKLSGNAFDQPRDTLQKSQLSHPKLLSLYGGKLTT
HHHHHCCHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHCCCEEEE
YRTTATEVIEWVEDAIGERPSLANFDKLQLD
EECHHHHHHHHHHHHHCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]