Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167622464

Identifier: 167622464

GI number: 167622464

Start: 632746

End: 634089

Strand: Reverse

Name: 167622464

Synonym: Shal_0524

Alternate gene names: NA

Gene position: 634089-632746 (Counterclockwise)

Preceding gene: 167622465

Following gene: 167622463

Centisome position: 12.13

GC content: 42.19

Gene sequence:

>1344_bases
ATGATGAGATCAGATTTGAATAATACAGATGCTGAAATCATGCAGTCATACACTGTTATGGTTAATGGAGGTAGTGGTGT
ACTCGTCAATGCTATGACATTGGATTACTCCTACGTACTAACCGCAGCCCATGTAATTCGTAAGAAGAAAGGTGATATTG
CCGTCCTTGATTTAGATGATATTAATGTCTTAGATTATAAAAGTGAGAAACTCAAAGTTTTAGCTGTGCTCATTGACCCC
GCCCCCCACGATGCGGAGGATCCTACTTATGATTGCGCAATTTTAAAAGTTGAATATCAGGCTAGAGTGTTACAAAGATG
TTTTGCTGCTTCTAGATTACCTCATCTTGCCGCCATTATATTAGTTGGATATCCAGCAACTGAAAGAGGAAGTGCAGATC
AAATAAAGCAGTATGATGGACATAAGACAAGTGTGGTCAACAAACTTGTCATTCTCACAATTAACGGCGTTCCAGCTAAA
TCGACGATCCAGGGCATGTCTGGTGGAGGCGTTTACCACATCCAAGCTGGAAGTCCATTTCTTATCGGCGTTGAATTCCA
GATGGACGGCACCGGCGAAGAGCAGCAATACGGCCGAGTACAGTGCCACAGTTTAGCTAGATTTGAGGAAATCATAACTG
CATGTACAAGTGCGCAGATGATTCCTGCTCATTTGGAGTGCTTTTCTAGAATGCGGGAGATGATATTCGCGTTCAATGTT
ATTGACCCAAATAACGTTCACCAGCTAAAAGTGGCGTTAGAGGGCTTTGCCGATTCGCTAATAAGGGGCGGAATTCCCGC
GCCTTATGAGGTCATGGAGCAATATGATTTACAACTGCTAGTTGATTCCAAGCGACCTGACGAACTCAAAAATCAAGAAT
TATGGGTGGCTTACCTAGAGTTTTTAGTGATCTGTGCTTTGATGGATAATGTTGGAGCTGCGGATGCTAATTACATAAAA
AATATAGAGCGAAAGCGACGGCTGTTATATACCAGTGACGGTTCTAATTGGCTTCGTCGCCTAGAAGAGCTGCTTAAAAC
TGCGCGCAAATATTTAGATAAAAATGGCACGCTCATCGTTGCGTCACCAGAAGCCGCTGCACAGCTTTTACCACCGAATT
TTACGCTTAAAAATGTGATAAGTAATATTGCTGTAGTGCCAAATGAAGGCCCATTAGCTATTGATACAGTTGAAAGCGCC
ATCTATACGAGCTTCAAACTTACTCATTTGGAAGGGCTTCGAAAGAATTGTGTGATTGATAGCGAGGATGAATATCAAGG
CTTGCCTTCAGGTCGCGCGCAATTGCAGTTGTTTAAGGATAAGCTTAATGAAATTATTAACTAA

Upstream 100 bases:

>100_bases
TCAACTAGTGGCAACGTGCTATTTAATTATAGGGATGTAATAACGCCCTTGCTTTTGGCTCATGAAATAGAGAGCTATTC
CTCTCGTCTAGAGGTGCTCG

Downstream 100 bases:

>100_bases
AGAAGTCGATCTGAGCTTCTTATCTGATCATTATGAAAACATTAGATTTCATATGTTTTGTTCTGATGACCCTCTTTCCT
TTATTTCCTGCATAGCGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP
APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK
STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV
IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK
NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA
IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN

Sequences:

>Translated_447_residues
MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP
APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK
STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV
IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK
NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA
IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN
>Mature_447_residues
MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP
APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK
STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV
IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK
NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA
IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49642; Mature: 49642

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDD
CCCCCCCCCHHHHHCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC
INVLDYKSEKLKVLAVLIDPAPHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAII
CEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHEEEEE
LVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAKSTIQGMSGGGVYHIQAGSPF
EEECCCCCCCCHHHHHHCCCCHHHHHCEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCE
LIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV
EEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEC
IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLE
CCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
FLVICALMDNVGAADANYIKNIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIV
HHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE
ASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESAIYTSFKLTHLEGLRKNCVID
ECCHHHHHHCCCCCHHHHHHHCEEECCCCCCEEHHHHHHHHHHHEEHHHHHHHHHCCCCC
SEDEYQGLPSGRAQLQLFKDKLNEIIN
CCHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDD
CCCCCCCCCHHHHHCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC
INVLDYKSEKLKVLAVLIDPAPHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAII
CEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHEEEEE
LVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAKSTIQGMSGGGVYHIQAGSPF
EEECCCCCCCCHHHHHHCCCCHHHHHCEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCE
LIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV
EEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEC
IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLE
CCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH
FLVICALMDNVGAADANYIKNIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIV
HHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE
ASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESAIYTSFKLTHLEGLRKNCVID
ECCHHHHHHCCCCCHHHHHHHCEEECCCCCCEEHHHHHHHHHHHEEHHHHHHHHHCCCCC
SEDEYQGLPSGRAQLQLFKDKLNEIIN
CCHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA