| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622464
Identifier: 167622464
GI number: 167622464
Start: 632746
End: 634089
Strand: Reverse
Name: 167622464
Synonym: Shal_0524
Alternate gene names: NA
Gene position: 634089-632746 (Counterclockwise)
Preceding gene: 167622465
Following gene: 167622463
Centisome position: 12.13
GC content: 42.19
Gene sequence:
>1344_bases ATGATGAGATCAGATTTGAATAATACAGATGCTGAAATCATGCAGTCATACACTGTTATGGTTAATGGAGGTAGTGGTGT ACTCGTCAATGCTATGACATTGGATTACTCCTACGTACTAACCGCAGCCCATGTAATTCGTAAGAAGAAAGGTGATATTG CCGTCCTTGATTTAGATGATATTAATGTCTTAGATTATAAAAGTGAGAAACTCAAAGTTTTAGCTGTGCTCATTGACCCC GCCCCCCACGATGCGGAGGATCCTACTTATGATTGCGCAATTTTAAAAGTTGAATATCAGGCTAGAGTGTTACAAAGATG TTTTGCTGCTTCTAGATTACCTCATCTTGCCGCCATTATATTAGTTGGATATCCAGCAACTGAAAGAGGAAGTGCAGATC AAATAAAGCAGTATGATGGACATAAGACAAGTGTGGTCAACAAACTTGTCATTCTCACAATTAACGGCGTTCCAGCTAAA TCGACGATCCAGGGCATGTCTGGTGGAGGCGTTTACCACATCCAAGCTGGAAGTCCATTTCTTATCGGCGTTGAATTCCA GATGGACGGCACCGGCGAAGAGCAGCAATACGGCCGAGTACAGTGCCACAGTTTAGCTAGATTTGAGGAAATCATAACTG CATGTACAAGTGCGCAGATGATTCCTGCTCATTTGGAGTGCTTTTCTAGAATGCGGGAGATGATATTCGCGTTCAATGTT ATTGACCCAAATAACGTTCACCAGCTAAAAGTGGCGTTAGAGGGCTTTGCCGATTCGCTAATAAGGGGCGGAATTCCCGC GCCTTATGAGGTCATGGAGCAATATGATTTACAACTGCTAGTTGATTCCAAGCGACCTGACGAACTCAAAAATCAAGAAT TATGGGTGGCTTACCTAGAGTTTTTAGTGATCTGTGCTTTGATGGATAATGTTGGAGCTGCGGATGCTAATTACATAAAA AATATAGAGCGAAAGCGACGGCTGTTATATACCAGTGACGGTTCTAATTGGCTTCGTCGCCTAGAAGAGCTGCTTAAAAC TGCGCGCAAATATTTAGATAAAAATGGCACGCTCATCGTTGCGTCACCAGAAGCCGCTGCACAGCTTTTACCACCGAATT TTACGCTTAAAAATGTGATAAGTAATATTGCTGTAGTGCCAAATGAAGGCCCATTAGCTATTGATACAGTTGAAAGCGCC ATCTATACGAGCTTCAAACTTACTCATTTGGAAGGGCTTCGAAAGAATTGTGTGATTGATAGCGAGGATGAATATCAAGG CTTGCCTTCAGGTCGCGCGCAATTGCAGTTGTTTAAGGATAAGCTTAATGAAATTATTAACTAA
Upstream 100 bases:
>100_bases TCAACTAGTGGCAACGTGCTATTTAATTATAGGGATGTAATAACGCCCTTGCTTTTGGCTCATGAAATAGAGAGCTATTC CTCTCGTCTAGAGGTGCTCG
Downstream 100 bases:
>100_bases AGAAGTCGATCTGAGCTTCTTATCTGATCATTATGAAAACATTAGATTTCATATGTTTTGTTCTGATGACCCTCTTTCCT TTATTTCCTGCATAGCGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 447; Mature: 447
Protein sequence:
>447_residues MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN
Sequences:
>Translated_447_residues MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN >Mature_447_residues MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDDINVLDYKSEKLKVLAVLIDP APHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAIILVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAK STIQGMSGGGVYHIQAGSPFLIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLEFLVICALMDNVGAADANYIK NIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIVASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESA IYTSFKLTHLEGLRKNCVIDSEDEYQGLPSGRAQLQLFKDKLNEIIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49642; Mature: 49642
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDD CCCCCCCCCHHHHHCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC INVLDYKSEKLKVLAVLIDPAPHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAII CEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHEEEEE LVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAKSTIQGMSGGGVYHIQAGSPF EEECCCCCCCCHHHHHHCCCCHHHHHCEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCE LIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV EEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEC IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLE CCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH FLVICALMDNVGAADANYIKNIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIV HHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE ASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESAIYTSFKLTHLEGLRKNCVID ECCHHHHHHCCCCCHHHHHHHCEEECCCCCCEEHHHHHHHHHHHEEHHHHHHHHHCCCCC SEDEYQGLPSGRAQLQLFKDKLNEIIN CCHHCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MMRSDLNNTDAEIMQSYTVMVNGGSGVLVNAMTLDYSYVLTAAHVIRKKKGDIAVLDLDD CCCCCCCCCHHHHHCEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECC INVLDYKSEKLKVLAVLIDPAPHDAEDPTYDCAILKVEYQARVLQRCFAASRLPHLAAII CEEECCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHEEEEE LVGYPATERGSADQIKQYDGHKTSVVNKLVILTINGVPAKSTIQGMSGGGVYHIQAGSPF EEECCCCCCCCHHHHHHCCCCHHHHHCEEEEEEECCCCCHHHHCCCCCCCEEEEECCCCE LIGVEFQMDGTGEEQQYGRVQCHSLARFEEIITACTSAQMIPAHLECFSRMREMIFAFNV EEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEC IDPNNVHQLKVALEGFADSLIRGGIPAPYEVMEQYDLQLLVDSKRPDELKNQELWVAYLE CCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHH FLVICALMDNVGAADANYIKNIERKRRLLYTSDGSNWLRRLEELLKTARKYLDKNGTLIV HHHHHHHHHCCCCCCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE ASPEAAAQLLPPNFTLKNVISNIAVVPNEGPLAIDTVESAIYTSFKLTHLEGLRKNCVID ECCHHHHHHCCCCCHHHHHHHCEEECCCCCCEEHHHHHHHHHHHEEHHHHHHHHHCCCCC SEDEYQGLPSGRAQLQLFKDKLNEIIN CCHHCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA