| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167622465
Identifier: 167622465
GI number: 167622465
Start: 634067
End: 635122
Strand: Reverse
Name: 167622465
Synonym: Shal_0525
Alternate gene names: NA
Gene position: 635122-634067 (Counterclockwise)
Preceding gene: 167622466
Following gene: 167622464
Centisome position: 12.15
GC content: 44.41
Gene sequence:
>1056_bases TTGAGCATAGTCGTGCGCGTCCTTAAAGCAAATCATGGAGATTGCATACTGGTTAGCCATGAAGGGCCTTCGAGTGTTTT CAACCTACTGATAGATGGTGGGACATCGACGACTTTCAGACATGGGCCTAGGCAGCGCTATGCGGGAGCCTTATGCAATG CTCTTGATGATCTGAAAAAGAGGGGGCAGCACGTCGATCTGGCGATCCTAACCCATATTGATGACGACCATATCCATGGC CTTATCAAAGCTTTCGAAAAGCCTGGCTACCTCGGTCAATTAGTTAAATCAATCTGGTTCAATTCGTCTCGGTTAATAAC ACGTCATTTTAATGTTCCTGAGATTTCGGAAAATAATATTCTATTGACTGACGATTCTCCTGAAACAAGCGTGAGTCAGG GGAAAGAGCTCGAGACATTACTCGATGATATCGGATGTGAGCGAGCGCCTCTTATTATGGCTGGCCAATCTTATGAAGTC GGTCCGTTCACTTTGAAAATATTGTCACCGGAGCCAAGGCAGCTGGAGCGGCTTTTGCACAAATGGCCAACTGAAGTCGA ATCAGGTGCGACCTCATCGCATGACAATGATTACCACCTTTCTTTAAGCGAGATCTGGGCAGAAGACAAGTTTAAACCCG ATCCGTCTATTTACAATGGAAGTTCTGTTGCATTTATCCTTGAAGCAGACGGCAAGAAAATGCTTTTTCTTGGGGACGCG CACGACCAGGTCGTTGCAGAAAATCTAAGAGCATTTGGTTACAGCGACACGAATAAGCTTAAGCTGGATCTCGTAAAAGT CTCACACCATGGCAGTCAGAACAATACAAGCAATGAGTTTCTTTCACTGCTGGATTCGTCACGTTACGTCATTTCAACTA ATGGTTCTAAGCATGGGCTTCCTAATAAGAGGACAATTGCTAGGATAATGAAATCAACTAGTGGCAACGTGCTATTTAAT TATAGGGATGTAATAACGCCCTTGCTTTTGGCTCATGAAATAGAGAGCTATTCCTCTCGTCTAGAGGTGCTCGATGATGA GATCAGATTTGAATAA
Upstream 100 bases:
>100_bases TTTTAGTGGTTTAATATAAAATCAAAACCATATTAGTTGATAATATTATTACGCTAGAAGAGGCGGAAATGACACGAAAA ACAGAGAAAAGGAGATCCAG
Downstream 100 bases:
>100_bases TACAGATGCTGAAATCATGCAGTCATACACTGTTATGGTTAATGGAGGTAGTGGTGTACTCGTCAATGCTATGACATTGG ATTACTCCTACGTACTAACC
Product: hypothetical protein
Products: NA
Alternate protein names: Zn-Dependent Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Hydrolase-Like Protein; Beta-Lactamase Domain Protein; Beta-Lactamase Protein
Number of amino acids: Translated: 351; Mature: 350
Protein sequence:
>351_residues MSIVVRVLKANHGDCILVSHEGPSSVFNLLIDGGTSTTFRHGPRQRYAGALCNALDDLKKRGQHVDLAILTHIDDDHIHG LIKAFEKPGYLGQLVKSIWFNSSRLITRHFNVPEISENNILLTDDSPETSVSQGKELETLLDDIGCERAPLIMAGQSYEV GPFTLKILSPEPRQLERLLHKWPTEVESGATSSHDNDYHLSLSEIWAEDKFKPDPSIYNGSSVAFILEADGKKMLFLGDA HDQVVAENLRAFGYSDTNKLKLDLVKVSHHGSQNNTSNEFLSLLDSSRYVISTNGSKHGLPNKRTIARIMKSTSGNVLFN YRDVITPLLLAHEIESYSSRLEVLDDEIRFE
Sequences:
>Translated_351_residues MSIVVRVLKANHGDCILVSHEGPSSVFNLLIDGGTSTTFRHGPRQRYAGALCNALDDLKKRGQHVDLAILTHIDDDHIHG LIKAFEKPGYLGQLVKSIWFNSSRLITRHFNVPEISENNILLTDDSPETSVSQGKELETLLDDIGCERAPLIMAGQSYEV GPFTLKILSPEPRQLERLLHKWPTEVESGATSSHDNDYHLSLSEIWAEDKFKPDPSIYNGSSVAFILEADGKKMLFLGDA HDQVVAENLRAFGYSDTNKLKLDLVKVSHHGSQNNTSNEFLSLLDSSRYVISTNGSKHGLPNKRTIARIMKSTSGNVLFN YRDVITPLLLAHEIESYSSRLEVLDDEIRFE >Mature_350_residues SIVVRVLKANHGDCILVSHEGPSSVFNLLIDGGTSTTFRHGPRQRYAGALCNALDDLKKRGQHVDLAILTHIDDDHIHGL IKAFEKPGYLGQLVKSIWFNSSRLITRHFNVPEISENNILLTDDSPETSVSQGKELETLLDDIGCERAPLIMAGQSYEVG PFTLKILSPEPRQLERLLHKWPTEVESGATSSHDNDYHLSLSEIWAEDKFKPDPSIYNGSSVAFILEADGKKMLFLGDAH DQVVAENLRAFGYSDTNKLKLDLVKVSHHGSQNNTSNEFLSLLDSSRYVISTNGSKHGLPNKRTIARIMKSTSGNVLFNY RDVITPLLLAHEIESYSSRLEVLDDEIRFE
Specific function: Unknown
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39189; Mature: 39057
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIVVRVLKANHGDCILVSHEGPSSVFNLLIDGGTSTTFRHGPRQRYAGALCNALDDLKK CCEEEEEEECCCCCEEEEECCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH RGQHVDLAILTHIDDDHIHGLIKAFEKPGYLGQLVKSIWFNSSRLITRHFNVPEISENNI CCCEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCE LLTDDSPETSVSQGKELETLLDDIGCERAPLIMAGQSYEVGPFTLKILSPEPRQLERLLH EEECCCCCCHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH KWPTEVESGATSSHDNDYHLSLSEIWAEDKFKPDPSIYNGSSVAFILEADGKKMLFLGDA HCCCHHHCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECC HDQVVAENLRAFGYSDTNKLKLDLVKVSHHGSQNNTSNEFLSLLDSSRYVISTNGSKHGL HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC PNKRTIARIMKSTSGNVLFNYRDVITPLLLAHEIESYSSRLEVLDDEIRFE CCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SIVVRVLKANHGDCILVSHEGPSSVFNLLIDGGTSTTFRHGPRQRYAGALCNALDDLKK CEEEEEEECCCCCEEEEECCCHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH RGQHVDLAILTHIDDDHIHGLIKAFEKPGYLGQLVKSIWFNSSRLITRHFNVPEISENNI CCCEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCE LLTDDSPETSVSQGKELETLLDDIGCERAPLIMAGQSYEVGPFTLKILSPEPRQLERLLH EEECCCCCCHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHH KWPTEVESGATSSHDNDYHLSLSEIWAEDKFKPDPSIYNGSSVAFILEADGKKMLFLGDA HCCCHHHCCCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECC HDQVVAENLRAFGYSDTNKLKLDLVKVSHHGSQNNTSNEFLSLLDSSRYVISTNGSKHGL HHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEECCCCCCC PNKRTIARIMKSTSGNVLFNYRDVITPLLLAHEIESYSSRLEVLDDEIRFE CCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA