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The map label for this gene is 167039604

Identifier: 167039604

GI number: 167039604

Start: 974621

End: 975544

Strand: Reverse

Name: 167039604

Synonym: Teth514_0952

Alternate gene names: NA

Gene position: 975544-974621 (Counterclockwise)

Preceding gene: 167039605

Following gene: 167039584

Centisome position: 39.7

GC content: 32.68

Gene sequence:

>924_bases
ATGTCTATGATAGAAGAAAAAATATCACCTATGCTGGCATCCAGTAGTGACCCTTTTGATAGCCCCGAATGGATATATGA
AATCAAATGGGATGGTTCAAGGACTATTGCCTTTCTTTCAAATAAAACAAGACTTCAAGATAGAAGGCTTGTTGATATAA
CCCATCAGTTTCCAGATTTGGCATTACTTTATAAGCAAATAAAAGCAAAAGAAGCAATACTTGACGGTGAACTTGTAGTT
TTAAAAAACGGCAAGCCCAGTTACAAAAGCATTATGTCGAGAAAGCATCAACAAAATTTAGTAAAAATAAATCTTTTAAG
CAAGATAATGCCCGTAATTTTCATAACATGGGATATATTATACTTAAACGGCAAATCTCTTGTAGAATTGCCACTTATAG
AGAGAAAAGATATACTTAGAAAAACAGTTAAAGAAAATGAGATCATAAAAATATCAGATTTTATATTTGAACATGGAAAA
ATGCTTTTTGAAGAGACAGGCAAAAGAGGACTTGAAGGAATTGTTGCCAAAAAAGCAGATTCAAAATATTTAATAGGAAA
AAGGAGTAAACTCTGGCTTAAGTCAAAACATTTTATTGTAATAAATGCTGTTATTATAGGGTACAGAACTGACAAAACAG
CCCTCATACTGGGGCTTTACGATGAGGAAAATAATTTAATAAACATAGGAAGTTGTGAATCAGGCCTATCCCAGAAGGAA
TTAAAAGCATTCTATGAAGTTGCCAAGGAGATAAAAGCCCCAGATAATTATTATAACTTTAAAGAAAAAAATGTGCAGTG
GTTAAAACCCCTACTGACATGTAAAGTGAGATTTATGGAATGGTCTGAAAACATGAAGATGAGGACACCTTCTTTTATCC
AATTTGAGTATAATGTAAAGCCAGAAGAGTGCAGGTTTGAATAA

Upstream 100 bases:

>100_bases
GATTTAGTAAGTGCACTAAAAGCAAGCATTGAATCTGTAAAGAATGAAGAAAAAGCAAAAAAAGGACACAAAAGAAAAGG
CGCATAAAGGAAGATTGAAT

Downstream 100 bases:

>100_bases
CCTCACTTCAAAAATTTGATATAAACTTCCCTTCTCCTTGGACCATCAAACTCACAAAAGTAAATACCCTGCCAAGTTCC
TAAAAGTGGCCTTCCATTTT

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDLALLYKQIKAKEAILDGELVV
LKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDILYLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGK
MLFEETGKRGLEGIVAKKADSKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRTPSFIQFEYNVKPEECRFE

Sequences:

>Translated_307_residues
MSMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDLALLYKQIKAKEAILDGELVV
LKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDILYLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGK
MLFEETGKRGLEGIVAKKADSKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRTPSFIQFEYNVKPEECRFE
>Mature_306_residues
SMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDLALLYKQIKAKEAILDGELVVL
KNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDILYLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGKM
LFEETGKRGLEGIVAKKADSKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKEL
KAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRTPSFIQFEYNVKPEECRFE

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

Organism=Homo sapiens, GI4557719, Length=338, Percent_Identity=25.1479289940828, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 35856; Mature: 35725

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDL
CCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEHHCCCHH
ALLYKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
HHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHCCEEEHHHHHHHHHHHHEEEEEE
YLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGKMLFEETGKRGLEGIVAKKAD
EECCCCEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
CCEEECCCCEEEEECCCEEEEEEEEEEEECCCEEEEEEEEECCCCEEEECCCCCCCCHHH
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRTPSFIQFEYNVK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCC
PEECRFE
CHHCCCC
>Mature Secondary Structure 
SMIEEKISPMLASSSDPFDSPEWIYEIKWDGSRTIAFLSNKTRLQDRRLVDITHQFPDL
CHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEHHCCCHH
ALLYKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
HHHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHCCEEEHHHHHHHHHHHHEEEEEE
YLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGKMLFEETGKRGLEGIVAKKAD
EECCCCEEEECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
CCEEECCCCEEEEECCCEEEEEEEEEEEECCCEEEEEEEEECCCCEEEECCCCCCCCHHH
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRTPSFIQFEYNVK
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCCEEEEEECCC
PEECRFE
CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]