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The map label for this gene is ygbF [C]

Identifier: 163845273

GI number: 163845273

Start: 1145632

End: 1147029

Strand: Reverse

Name: ygbF [C]

Synonym: BSUIS_B1169

Alternate gene names: 163845273

Gene position: 1147029-1145632 (Counterclockwise)

Preceding gene: 163845274

Following gene: 163845272

Centisome position: 81.88

GC content: 59.94

Gene sequence:

>1398_bases
ATGAGGAAACCAATGAGAAAAGTGACGCTGGCCATGGCCATGCTGCCGCTTTTGGCAAGTGCTCCGGTGCTGGCGGCATC
TGTTTCTTCGCAGGAAAAAGCCATCTATCTCGCGCAGGCTGGCGATCCGGGCATGAGCCAGTTCGCCCAGCAAGTGTGCA
CTATTGCGCGTCAGAATGCACAGTCCTATTCCCGGATTTTGCAGCTTCGCGACAAGATGCTGAAAATCCAGCGGGACAAT
GAAGCCCGTTTTCAGGCGCTGGAAAAGGGACGCGGAGGCGCACAGAATCATGTCAGCATCGGCTCGACCGCAATCCTTGA
CGATGCCATGCGCGGTAATGGCGGCGTCTTTGGCCAGGGTGGCGGCTATCAGAGTCCCGGCATGCAGCAGGAACTGGTCC
GCAACCTGACCGGCAAGGTCGAGGATGTGGATGCGCAGATTTCCTTCACCGACAACCAGTTGCAAAAAACCCAGGAAGAC
AATGAATTCCGGTTTGAGGAACTGGAAAAGAAAAAGGGCCTGACGCCGCCGCAGGCGCAGCGCACAAGCCAGCCTGCTCA
GCCTGCGCCCGCACCGGGCGCTGACCTTTGTGCGCAGGGCATGGGCAATCCCGTCGCGATTGCAGACGCATTGAGCGCGC
GCGCGGAAGCCATGAATTTCCAGATTCTGGAAATGCAGGATCAGATGCAGAAGATGCAGGAGGAAAACGAACGCCGTTTT
CAGGCGCTGGAATCGGGTGGCCGCGCGGATGCGGGCGGTTCTTCCCGCGATACGTCTCTTGCCGATGCGGGTGCAGCCGG
AAGCCTTGATGGCGGGGTTTCCGGTTCCGCCGCCTCGCAGGGCGGCCCGGCAAGAGGCGAGCCGCCGCAAACGCTCGGCT
CGATCCGCTTCGACACCAATGGCAATGTAATCGGCGAAACGCTCAACGCCGCGCCGCAGCCCGTGCAGCAAGGGGGAGGG
GGGATTCAGACTGGCGGTGCCGCCAATGATGCGGTTGCCTCGCTTCCCACCGACGACAATCCCAACTCGCTTTATCAGGC
TGCGTATCAATATCTCATGTCTGGTGATTACAAGGCTGCCGAAGCGGGCTTCCGCGAGCATGTAAAGCGCTATCCTGCCG
ACCCGATGACGGCGGAGGCGCGCTTCTGGCTTGGCGAATCGCTCTATGGTCAGGGCCGTTACCCCGAAGCTGCAACTCTT
TTCATCGATACGCAGCGCGATTATCCCGATTCCAAGCGCGCGCCGGAAAACATGTTCAAGCTTGGCATGGCGCTGGAGAA
AATGGACAATCATGATGTCGCCTGCGCGACCTTCGCGCAGATTCCCCAACGCTATCCCAAGGCGGCGCCAGCCATTTTGA
AGCGTGTCGCCGATGAGCGCAGTCGCGCCAAGTGCTGA

Upstream 100 bases:

>100_bases
GCTCGCGGGAGCATTCAAGACGCATTCAAAATGCATTTAGGCGCGGTGCTTGATTATCCTGTTCATTTTATCGCAGGGCA
AATAGCAGGGGCAAAAAGGA

Downstream 100 bases:

>100_bases
TTGCGGAGTAAGTTCGTGGGGCTTTCCCCTGTCAATATCTTCAAGCCGTTCGGTCTGGGGCGTGCGAAAGCGGTGATTGC
TGCCGTTTCGGGCGGCAGCG

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: L-Pal System YbgF; TPR Repeat-Containing Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGG
GIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL
FIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRAKC

Sequences:

>Translated_465_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGG
GIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL
FIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRAKC
>Mature_465_residues
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNAQSYSRILQLRDKMLKIQRDN
EARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQGGGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQED
NEFRFEELEKKKGLTPPQAQRTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAASQGGPARGEPPQTLGSIRFDTNGNVIGETLNAAPQPVQQGGG
GIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAAEAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATL
FIDTQRDYPDSKRAPENMFKLGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRAKC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=144, Percent_Identity=28.4722222222222, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49829; Mature: 49829

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
QSYSRILQLRDKMLKIQRDNEARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
GGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQEDNEFRFEELEKKKGLTPPQAQ
CCCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
RTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
HCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAASQGGPARGEPPQTLGSIRFDTN
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCC
GNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAA
CCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCHHH
EAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFK
HHHHHHHHHHCCCCCCCCHHHHHHCHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
LGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRAKC
HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKPMRKVTLAMAMLPLLASAPVLAASVSSQEKAIYLAQAGDPGMSQFAQQVCTIARQNA
CCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
QSYSRILQLRDKMLKIQRDNEARFQALEKGRGGAQNHVSIGSTAILDDAMRGNGGVFGQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCC
GGYQSPGMQQELVRNLTGKVEDVDAQISFTDNQLQKTQEDNEFRFEELEKKKGLTPPQAQ
CCCCCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
RTSQPAQPAPAPGADLCAQGMGNPVAIADALSARAEAMNFQILEMQDQMQKMQEENERRF
HCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
QALESGGRADAGGSSRDTSLADAGAAGSLDGGVSGSAASQGGPARGEPPQTLGSIRFDTN
HHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCC
GNVIGETLNAAPQPVQQGGGGIQTGGAANDAVASLPTDDNPNSLYQAAYQYLMSGDYKAA
CCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCHHH
EAGFREHVKRYPADPMTAEARFWLGESLYGQGRYPEAATLFIDTQRDYPDSKRAPENMFK
HHHHHHHHHHCCCCCCCCHHHHHHCHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHH
LGMALEKMDNHDVACATFAQIPQRYPKAAPAILKRVADERSRAKC
HHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA