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The map label for this gene is slyA [H]

Identifier: 163844890

GI number: 163844890

Start: 729834

End: 730271

Strand: Reverse

Name: slyA [H]

Synonym: BSUIS_B0753

Alternate gene names: 163844890

Gene position: 730271-729834 (Counterclockwise)

Preceding gene: 163844893

Following gene: 163844889

Centisome position: 52.13

GC content: 56.39

Gene sequence:

>438_bases
ATGAAACAAGCTTGGGTCGAATTTGCGCCGCTTCTTGCCAGTGCTGCCAGAGGATGGCGGAAAGCCTTTGATGCGGCAAT
GGCAGAGCATGGTCTTTCCGATGCGAAGGCCATTCCGCTGATTACCCTCTTGCGGCATGGCGATTGCATTCCTCAAGGCG
TGCTGGCCGAACGGGTCGGCATTGAGGGAGCAACAATCGTCCGGATCGTTGACGAACTGGAAAAGGATGGTCTCATCCAG
CGGATCGTCGACGATGCCGATCGTCGTGTCAAACTCATTCAACTGACAGAGGACGGCCGCGCCGTCGCCACGCAGGTGGA
GAAGTCCGCGGCCCGTCTTCGTGCACAGTTTCTGGGCGGATTCGATTTGCAGGAAGTCGATGTCGCCATGGAAGTGCTGC
GCAAACTTAACGAGAAATTTCAGAACCAGCCTTCCTGA

Upstream 100 bases:

>100_bases
TCGGCTACACAAACAATTGATGGGAAATAATTGCATGGTTGCAATTCATTAGATTGCATCCATATAGATGTGAAGCTATC
TATCTGGATGAAATGAATTG

Downstream 100 bases:

>100_bases
AACCGGGGGGCTGCGTGCATTTTAGCTGGTGTCCCCGCACTTATGACGAAGCTTGCCGAAACAACCCCGAAGTTCTGGGA
CGTAGTCTTTTCGCTGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKQAWVEFAPLLASAARGWRKAFDAAMAEHGLSDAKAIPLITLLRHGDCIPQGVLAERVGIEGATIVRIVDELEKDGLIQ
RIVDDADRRVKLIQLTEDGRAVATQVEKSAARLRAQFLGGFDLQEVDVAMEVLRKLNEKFQNQPS

Sequences:

>Translated_145_residues
MKQAWVEFAPLLASAARGWRKAFDAAMAEHGLSDAKAIPLITLLRHGDCIPQGVLAERVGIEGATIVRIVDELEKDGLIQ
RIVDDADRRVKLIQLTEDGRAVATQVEKSAARLRAQFLGGFDLQEVDVAMEVLRKLNEKFQNQPS
>Mature_145_residues
MKQAWVEFAPLLASAARGWRKAFDAAMAEHGLSDAKAIPLITLLRHGDCIPQGVLAERVGIEGATIVRIVDELEKDGLIQ
RIVDDADRRVKLIQLTEDGRAVATQVEKSAARLRAQFLGGFDLQEVDVAMEVLRKLNEKFQNQPS

Specific function: Transcription regulator that can both activate or repress expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=129, Percent_Identity=30.2325581395349, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16017; Mature: 16017

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQAWVEFAPLLASAARGWRKAFDAAMAEHGLSDAKAIPLITLLRHGDCIPQGVLAERVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHC
IEGATIVRIVDELEKDGLIQRIVDDADRRVKLIQLTEDGRAVATQVEKSAARLRAQFLGG
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
FDLQEVDVAMEVLRKLNEKFQNQPS
CCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKQAWVEFAPLLASAARGWRKAFDAAMAEHGLSDAKAIPLITLLRHGDCIPQGVLAERVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHC
IEGATIVRIVDELEKDGLIQRIVDDADRRVKLIQLTEDGRAVATQVEKSAARLRAQFLGG
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHCC
FDLQEVDVAMEVLRKLNEKFQNQPS
CCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA