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The map label for this gene is yciO [C]

Identifier: 162447073

GI number: 162447073

Start: 194343

End: 194891

Strand: Direct

Name: yciO [C]

Synonym: ACL_0203

Alternate gene names: 162447073

Gene position: 194343-194891 (Clockwise)

Preceding gene: 162447072

Following gene: 162447074

Centisome position: 12.98

GC content: 32.06

Gene sequence:

>549_bases
ATGACTAAATTACTTATTTTCCCAACTGATACTGTTTATGGATTAGGCACACCTTATTTAGATAAGGAAGGCTTAAAACA
AATCTATGAAATTAAAGGTAGAGACTTTAATAAACCCATAGCAATTTTAATTTCAAACTTAGAACAAGTAAAAGAGATTG
CTAAGGCGAGTGATAATGCTTTAAAAGTAGCATCTAAATTTTGGCCAGGTGGGTTAACACTTATCTTTGAAAGTAGTGAT
GCTTACTATCAACAAAGTGGAGAAAAAACAATCGGACTTAGAATGCCAAATCATAAATTAGCTTTAAAGTTAATCGATGA
ACTAGGACCACTAAAAACAACCTCTGTAAACTACTCAAATCAACCACCATTAAATGATTATGATGCAATCATGAAGGTAT
TTGGTGATAAAGTAGACAAGGTTTACCCAAATGAAGAGTCTTTAAGTGAGGTATCGTCTACAGTCATAGACTTTACACAT
GATTTACCATCACTTATTAGACAAGGTGACATCACACTTGATGAAATAATGAAAGTTCTTGAAAAATAG

Upstream 100 bases:

>100_bases
ACTTTAATCTTAAAATATTTTAAAGATGCTAAAGTAAGACAACTAAAAGACTTACAAGGTAAAGATCGTATGACGTTTGT
TGGTTTAGGTGGTGTATTTA

Downstream 100 bases:

>100_bases
AACTTTTTTCATGAAAATTTTTCATTATATGATAAAATGATAAAGGCTTATAAAAGGAAGTATAAAATATGGAAATTAGA
AACGTTGCCATCATCGCTCA

Product: dsRNA binding, YrdC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTKLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALKVASKFWPGGLTLIFESSD
AYYQQSGEKTIGLRMPNHKLALKLIDELGPLKTTSVNYSNQPPLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTH
DLPSLIRQGDITLDEIMKVLEK

Sequences:

>Translated_182_residues
MTKLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALKVASKFWPGGLTLIFESSD
AYYQQSGEKTIGLRMPNHKLALKLIDELGPLKTTSVNYSNQPPLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTH
DLPSLIRQGDITLDEIMKVLEK
>Mature_181_residues
TKLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNALKVASKFWPGGLTLIFESSDA
YYQQSGEKTIGLRMPNHKLALKLIDELGPLKTTSVNYSNQPPLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTHD
LPSLIRQGDITLDEIMKVLEK

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=171, Percent_Identity=25.7309941520468, Blast_Score=62, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=193, Percent_Identity=27.4611398963731, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI78707274, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 20400; Mature: 20268

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNA
CCEEEEEECCCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCH
LKVASKFWPGGLTLIFESSDAYYQQSGEKTIGLRMPNHKLALKLIDELGPLKTTSVNYSN
HHHHHHCCCCCEEEEEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCC
QPPLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTHDLPSLIRQGDITLDEIMKVL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EK
CC
>Mature Secondary Structure 
TKLLIFPTDTVYGLGTPYLDKEGLKQIYEIKGRDFNKPIAILISNLEQVKEIAKASDNA
CEEEEEECCCEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCH
LKVASKFWPGGLTLIFESSDAYYQQSGEKTIGLRMPNHKLALKLIDELGPLKTTSVNYSN
HHHHHHCCCCCEEEEEECCCHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCC
QPPLNDYDAIMKVFGDKVDKVYPNEESLSEVSSTVIDFTHDLPSLIRQGDITLDEIMKVL
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
EK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]