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The map label for this gene is sufD [H]

Identifier: 162148828

GI number: 162148828

Start: 3150235

End: 3151527

Strand: Reverse

Name: sufD [H]

Synonym: GDI_3057

Alternate gene names: 162148828

Gene position: 3151527-3150235 (Counterclockwise)

Preceding gene: 162148829

Following gene: 162148827

Centisome position: 79.9

GC content: 70.84

Gene sequence:

>1293_bases
GTGAACGCGGTCGCCGAGAACGCGGTCGCCCGGGGGGGCAGGACCGCCGGCGCCAGCGCCGCGTCCTTCCTGGCCCGGTA
TGACGGGCAGGCGGGCGCGAACCCGTCGCGCGACCGCGCCGCCGCGCTGCTGCGGGCTTCGGGCCTGCCGCGCACCGGGG
TCGAGGCCTGGAAATACACCTCGCTGCGGGCCCTGGCCGACATTCCGTTCGCCGCCGCGCCGGCCCGGCCCGACATGTCG
GCGGTCCACGCCATCGTGGCCGAGACCGAGCGGGAGTTCGCCCTGGATGCGGACCTGCCGCGCGCCGTCGTGGTCGATGG
CCGGTTCGATGCCGCGCTGTCGCGCCTGCCCGACGGCGTGACGGTCACGCGCCTGACCGCGCGGGACGAATCGCCGCCGT
ACGACGATGTCGCGACGGCGCTGAACACGCTGCTGGCCGATGACGGGCTGGTGCTGCATGTGGGGCCGGGCGTCGATGCC
GGGCGGATGCTGCTGCTGTCGGTGACGGTGGCGGACTCCGCGCCGCTGTCCGTCCATCCCCGGCACCGTATCGTGCTGGA
CCAGGGCGCGCGCCTGTCTGTGCTGGACCTCGCGGTCGGGCGCGGGGCCTACCTGCACAACCCGGTCTTCGACATCACGG
TCGCGGATAATGCCGCCCTGATCCATGCCAAGCTGCAGGCCGAGGACCCGGCGGCGCAGCACCTGGCCGTCATCCACGCC
GAAGTCGGCGCGGGCGCCAGCTATGACAGTTTCACCCTGACCCTGGGCGCTTCGCTGGCGCGGCACGAGGTCCACGCCCG
GCTGGCGGCCGAAGGCGGGATCGTGCACGTGAACGGCGCGCAACTGCTGGACGGGCGGCAGGTGGCCGACCTGACCAGCG
TCATCACCCATGCGGCGCCGGCGTGCAATTCGCGCCAGACGGTGAAGAATGTGCTGTCGGGCCATGCGCGCGGGGTATTC
CAGGGCAAGATCCTGGTGGAACGCATTGCGCAGAAGACCGACGGCTACCAGATGAATCAGGCGCTGCTGCTGTCCGATAC
CGCCGAGATCGACGCCAAGCCGGAACTGGAAATCTATGCCGACGACGTGCGCTGCAGCCACGGTGCGACCGTGGGGGCGC
TGGACCCGGATCAATTGTTCTATCTCCGCAGCCGCGGCGTGGCCGAGCATGAAGCCCGCGCCATCCTGGTCAAGGCCTTC
CTGCACGATGCGGTCGAATTGATCGGGGACGAGAGCCTGCGCGCGGTGCTGGATCGCGCGGTCGAATCCTGGTGGAACCG
GAAGGACGCGTAA

Upstream 100 bases:

>100_bases
TCCATGTGATGGCGCGCGGGCGCATCATCCACAGCGGCGGTCCCGAACTGGCGAAGCAGCTCGAGGCCCAGGGCTATGCC
CGCTTCCTGGCGGAGGCCGC

Downstream 100 bases:

>100_bases
CATGGATGTCTCGCCCGCCGTCATGCCCGACCCGATCGACGCCCTGCGCGCCCGCCGCGACGATTTCCCGATCCTGAACG
AGAGGGTGCACGGCAAGCCG

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNAVAENAVARGGRTAGASAASFLARYDGQAGANPSRDRAAALLRASGLPRTGVEAWKYTSLRALADIPFAAAPARPDMS
AVHAIVAETEREFALDADLPRAVVVDGRFDAALSRLPDGVTVTRLTARDESPPYDDVATALNTLLADDGLVLHVGPGVDA
GRMLLLSVTVADSAPLSVHPRHRIVLDQGARLSVLDLAVGRGAYLHNPVFDITVADNAALIHAKLQAEDPAAQHLAVIHA
EVGAGASYDSFTLTLGASLARHEVHARLAAEGGIVHVNGAQLLDGRQVADLTSVITHAAPACNSRQTVKNVLSGHARGVF
QGKILVERIAQKTDGYQMNQALLLSDTAEIDAKPELEIYADDVRCSHGATVGALDPDQLFYLRSRGVAEHEARAILVKAF
LHDAVELIGDESLRAVLDRAVESWWNRKDA

Sequences:

>Translated_430_residues
MNAVAENAVARGGRTAGASAASFLARYDGQAGANPSRDRAAALLRASGLPRTGVEAWKYTSLRALADIPFAAAPARPDMS
AVHAIVAETEREFALDADLPRAVVVDGRFDAALSRLPDGVTVTRLTARDESPPYDDVATALNTLLADDGLVLHVGPGVDA
GRMLLLSVTVADSAPLSVHPRHRIVLDQGARLSVLDLAVGRGAYLHNPVFDITVADNAALIHAKLQAEDPAAQHLAVIHA
EVGAGASYDSFTLTLGASLARHEVHARLAAEGGIVHVNGAQLLDGRQVADLTSVITHAAPACNSRQTVKNVLSGHARGVF
QGKILVERIAQKTDGYQMNQALLLSDTAEIDAKPELEIYADDVRCSHGATVGALDPDQLFYLRSRGVAEHEARAILVKAF
LHDAVELIGDESLRAVLDRAVESWWNRKDA
>Mature_430_residues
MNAVAENAVARGGRTAGASAASFLARYDGQAGANPSRDRAAALLRASGLPRTGVEAWKYTSLRALADIPFAAAPARPDMS
AVHAIVAETEREFALDADLPRAVVVDGRFDAALSRLPDGVTVTRLTARDESPPYDDVATALNTLLADDGLVLHVGPGVDA
GRMLLLSVTVADSAPLSVHPRHRIVLDQGARLSVLDLAVGRGAYLHNPVFDITVADNAALIHAKLQAEDPAAQHLAVIHA
EVGAGASYDSFTLTLGASLARHEVHARLAAEGGIVHVNGAQLLDGRQVADLTSVITHAAPACNSRQTVKNVLSGHARGVF
QGKILVERIAQKTDGYQMNQALLLSDTAEIDAKPELEIYADDVRCSHGATVGALDPDQLFYLRSRGVAEHEARAILVKAF
LHDAVELIGDESLRAVLDRAVESWWNRKDA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=380, Percent_Identity=34.4736842105263, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI87081955, Length=282, Percent_Identity=23.0496453900709, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45497; Mature: 45497

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVAENAVARGGRTAGASAASFLARYDGQAGANPSRDRAAALLRASGLPRTGVEAWKYT
CCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
SLRALADIPFAAAPARPDMSAVHAIVAETEREFALDADLPRAVVVDGRFDAALSRLPDGV
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCEEEECCCHHHHHHHCCCCE
TVTRLTARDESPPYDDVATALNTLLADDGLVLHVGPGVDAGRMLLLSVTVADSAPLSVHP
EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEECC
RHRIVLDQGARLSVLDLAVGRGAYLHNPVFDITVADNAALIHAKLQAEDPAAQHLAVIHA
CEEEEECCCCEEEEEEEECCCCCEECCCEEEEEECCCCEEEEEEECCCCCHHHHEEEEEE
EVGAGASYDSFTLTLGASLARHEVHARLAAEGGIVHVNGAQLLDGRQVADLTSVITHAAP
ECCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCEECCCHHHHHHHHHHHCCC
ACNSRQTVKNVLSGHARGVFQGKILVERIAQKTDGYQMNQALLLSDTAEIDAKPELEIYA
CCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
DDVRCSHGATVGALDPDQLFYLRSRGVAEHEARAILVKAFLHDAVELIGDESLRAVLDRA
CCEECCCCCEECCCCHHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VESWWNRKDA
HHHHHCCCCC
>Mature Secondary Structure
MNAVAENAVARGGRTAGASAASFLARYDGQAGANPSRDRAAALLRASGLPRTGVEAWKYT
CCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
SLRALADIPFAAAPARPDMSAVHAIVAETEREFALDADLPRAVVVDGRFDAALSRLPDGV
HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHEEECCCCCCEEEECCCHHHHHHHCCCCE
TVTRLTARDESPPYDDVATALNTLLADDGLVLHVGPGVDAGRMLLLSVTVADSAPLSVHP
EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEEECCCCCCEECC
RHRIVLDQGARLSVLDLAVGRGAYLHNPVFDITVADNAALIHAKLQAEDPAAQHLAVIHA
CEEEEECCCCEEEEEEEECCCCCEECCCEEEEEECCCCEEEEEEECCCCCHHHHEEEEEE
EVGAGASYDSFTLTLGASLARHEVHARLAAEGGIVHVNGAQLLDGRQVADLTSVITHAAP
ECCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEECCCCEECCCHHHHHHHHHHHCCC
ACNSRQTVKNVLSGHARGVFQGKILVERIAQKTDGYQMNQALLLSDTAEIDAKPELEIYA
CCCCHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEE
DDVRCSHGATVGALDPDQLFYLRSRGVAEHEARAILVKAFLHDAVELIGDESLRAVLDRA
CCEECCCCCEECCCCHHHHHEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VESWWNRKDA
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]