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The map label for this gene is yggW [C]

Identifier: 162148169

GI number: 162148169

Start: 2461459

End: 2462640

Strand: Direct

Name: yggW [C]

Synonym: GDI_2386

Alternate gene names: 162148169

Gene position: 2461459-2462640 (Clockwise)

Preceding gene: 162148168

Following gene: 162148170

Centisome position: 62.41

GC content: 70.14

Gene sequence:

>1182_bases
TTGCCATCTGACGCCGCACCGCTCGCGCTCTATATCCACTGGCCATTCTGCCTGGCCAAATGTCCGTACTGCGATTTCAA
CAGCCATGTCCGCGATGTCATCCCCCAGGCCCGCTTCGCCGCCGCCCTGCGGCGCGAACTGGCGCAGGACGCGGCACGGC
TGAACGCGGACGGGCCCCGCAGGCTGGGCTCGATCTTCTTCGGCGGGGGCACACCCTCGCTGATGGACCCGGCGACCGTG
GCGGCGCTGATCGCGGACGCCACCACCCTGTTCACCCCCCTGCCGGACCTGGAAATCACGCTGGAGGCCAACCCCACCAG
CGTCGAGGCCGGGCGGCTGCGCGCGTTCCGCGATGCCGGGATCAACCGGGTGTCGCTGGGCATCCAGAGCCTGGATGACG
ACGCGCTGCGCCTGCTGGGCCGGGAACATTCCGCCACGCAGGCCATAGATGCGCTGGATCTGGCGCGCGGCCTGTTCGAC
CGGATCTCGTTCGACCTGATCTATGCGCGGCCGGGCCAGTCCCTGCCGGCGTGGCGGGCCGAACTGGACCGGGCGCTCTC
GCTCGTCTCCGATCATCTGTCGCTGTATCAGTTGACCATCGAGCCCGGCACCCGGTTCGAGGGGCTGCACCGCCAGGGCC
TGCTGGCCCTTCCGGACGAGGACGATGCCGCGCGGCTGTACGAGGAAACGGCTATCGTCGCCGGCCGCCACGGACTGATG
GGGTACGAGGTCTCGAACTACGCCCGTCCCGGGGCGGAAAGCCGCCACAACCTGACCTACTGGCGCTATGGCGATTACCT
GGGCATCGGTCCCGGCGCGCATAGCCGCCTGACGCTGGACGGTACGCTGCACGCCACCCGCCGCCACCGCGCCCCCGAAC
CCTGGGCCGAACGGGTCGAGCGGCAGGGAAGCGGCGTGATGCAGGACGAGACCTTGTCGGCGCGCGACCGCGCCCGGGAA
ATGCTGCTGATGGGCCTGCGCCTGAGCGAGGGTATCCCCGAGGACCGCTTCGCCCGCCGCACCGGCATGGCGATGGCCGA
TGCGCTGGACCCCGCGATTCTGGCGGCGGCGCTGGAAGAAGGATATCTTCTGCGGGACGAGACGACGGACGGACCGGTCC
TGCGCGCAACACCGTCGGGCCGCCTCCGCCTGGAAGCGCTGCTCGGCGCCCTGGTGCTGTAG

Upstream 100 bases:

>100_bases
TGGCGGATGTCGCTGTTCCTGCTGATGGCGCGCAACGCCACCCCCGCCACCGAATTCTTCCGCATCCCGCCGGACCGGGT
CGTGGAACTGGGCGTGCGGC

Downstream 100 bases:

>100_bases
GACCCGGCCCACCAGCATTTAGGACGCCGCATGTTTTTCTGCCCTCTCCGGCGCGCGATGCGCCTCGGGACGACCCGACG
CGAATCGACGCCGCGCGAAG

Product: coproporphyrinogen III oxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MPSDAAPLALYIHWPFCLAKCPYCDFNSHVRDVIPQARFAAALRRELAQDAARLNADGPRRLGSIFFGGGTPSLMDPATV
AALIADATTLFTPLPDLEITLEANPTSVEAGRLRAFRDAGINRVSLGIQSLDDDALRLLGREHSATQAIDALDLARGLFD
RISFDLIYARPGQSLPAWRAELDRALSLVSDHLSLYQLTIEPGTRFEGLHRQGLLALPDEDDAARLYEETAIVAGRHGLM
GYEVSNYARPGAESRHNLTYWRYGDYLGIGPGAHSRLTLDGTLHATRRHRAPEPWAERVERQGSGVMQDETLSARDRARE
MLLMGLRLSEGIPEDRFARRTGMAMADALDPAILAAALEEGYLLRDETTDGPVLRATPSGRLRLEALLGALVL

Sequences:

>Translated_393_residues
MPSDAAPLALYIHWPFCLAKCPYCDFNSHVRDVIPQARFAAALRRELAQDAARLNADGPRRLGSIFFGGGTPSLMDPATV
AALIADATTLFTPLPDLEITLEANPTSVEAGRLRAFRDAGINRVSLGIQSLDDDALRLLGREHSATQAIDALDLARGLFD
RISFDLIYARPGQSLPAWRAELDRALSLVSDHLSLYQLTIEPGTRFEGLHRQGLLALPDEDDAARLYEETAIVAGRHGLM
GYEVSNYARPGAESRHNLTYWRYGDYLGIGPGAHSRLTLDGTLHATRRHRAPEPWAERVERQGSGVMQDETLSARDRARE
MLLMGLRLSEGIPEDRFARRTGMAMADALDPAILAAALEEGYLLRDETTDGPVLRATPSGRLRLEALLGALVL
>Mature_392_residues
PSDAAPLALYIHWPFCLAKCPYCDFNSHVRDVIPQARFAAALRRELAQDAARLNADGPRRLGSIFFGGGTPSLMDPATVA
ALIADATTLFTPLPDLEITLEANPTSVEAGRLRAFRDAGINRVSLGIQSLDDDALRLLGREHSATQAIDALDLARGLFDR
ISFDLIYARPGQSLPAWRAELDRALSLVSDHLSLYQLTIEPGTRFEGLHRQGLLALPDEDDAARLYEETAIVAGRHGLMG
YEVSNYARPGAESRHNLTYWRYGDYLGIGPGAHSRLTLDGTLHATRRHRAPEPWAERVERQGSGVMQDETLSARDRAREM
LLMGLRLSEGIPEDRFARRTGMAMADALDPAILAAALEEGYLLRDETTDGPVLRATPSGRLRLEALLGALVL

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=305, Percent_Identity=46.5573770491803, Blast_Score=245, Evalue=5e-65,
Organism=Escherichia coli, GI1789325, Length=385, Percent_Identity=38.4415584415584, Blast_Score=234, Evalue=6e-63,
Organism=Escherichia coli, GI87082341, Length=390, Percent_Identity=25.8974358974359, Blast_Score=112, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43096; Mature: 42965

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDAAPLALYIHWPFCLAKCPYCDFNSHVRDVIPQARFAAALRRELAQDAARLNADGPR
CCCCCCCEEEEEECHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH
RLGSIFFGGGTPSLMDPATVAALIADATTLFTPLPDLEITLEANPTSVEAGRLRAFRDAG
HHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCC
INRVSLGIQSLDDDALRLLGREHSATQAIDALDLARGLFDRISFDLIYARPGQSLPAWRA
CCEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHH
ELDRALSLVSDHLSLYQLTIEPGTRFEGLHRQGLLALPDEDDAARLYEETAIVAGRHGLM
HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCC
GYEVSNYARPGAESRHNLTYWRYGDYLGIGPGAHSRLTLDGTLHATRRHRAPEPWAERVE
CEEHHHCCCCCCCCCCCEEEEEECCEEECCCCCCCEEEECCCHHHHHHCCCCCHHHHHHH
RQGSGVMQDETLSARDRAREMLLMGLRLSEGIPEDRFARRTGMAMADALDPAILAAALEE
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCHHHHHHHHHC
GYLLRDETTDGPVLRATPSGRLRLEALLGALVL
CEEEECCCCCCCEEEECCCCCEEHHHHHHHHCC
>Mature Secondary Structure 
PSDAAPLALYIHWPFCLAKCPYCDFNSHVRDVIPQARFAAALRRELAQDAARLNADGPR
CCCCCCEEEEEECHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCH
RLGSIFFGGGTPSLMDPATVAALIADATTLFTPLPDLEITLEANPTSVEAGRLRAFRDAG
HHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCC
INRVSLGIQSLDDDALRLLGREHSATQAIDALDLARGLFDRISFDLIYARPGQSLPAWRA
CCEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHH
ELDRALSLVSDHLSLYQLTIEPGTRFEGLHRQGLLALPDEDDAARLYEETAIVAGRHGLM
HHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCC
GYEVSNYARPGAESRHNLTYWRYGDYLGIGPGAHSRLTLDGTLHATRRHRAPEPWAERVE
CEEHHHCCCCCCCCCCCEEEEEECCEEECCCCCCCEEEECCCHHHHHHCCCCCHHHHHHH
RQGSGVMQDETLSARDRAREMLLMGLRLSEGIPEDRFARRTGMAMADALDPAILAAALEE
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCHHHHHHHHHC
GYLLRDETTDGPVLRATPSGRLRLEALLGALVL
CEEEECCCCCCCEEEECCCCCEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]