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The map label for this gene is yqxC [H]

Identifier: 162147643

GI number: 162147643

Start: 1897151

End: 1897891

Strand: Reverse

Name: yqxC [H]

Synonym: GDI_1859

Alternate gene names: 162147643

Gene position: 1897891-1897151 (Counterclockwise)

Preceding gene: 162147644

Following gene: 162147642

Centisome position: 48.12

GC content: 70.58

Gene sequence:

>741_bases
GTGGCCAAGCAACGCGCGGACCAGATGCTGGTCGACCGGGGACTGGTGGAAAGCCGTACCCGCGCCCAGGCGCTGATCCT
GGCCGGCCTGGTCTTTTCGGGCGACCGGCGCGTGGCCAAGGCCGGCGACCAGTTGCCCGAGGACGCGCCGCTGCGGCTGA
AGGGACAGGATCATCCCTGGGTGTCGCGCGGCGGCATCAAACTGGCGCATGCGCTGGCGCATTTCGGCCTGTCGCCCGAA
GGCGGCATCTGCCTGGATGTCGGCGCGTCGACCGGCGGCTTCACCGACGTCCTGCTGACGCACGGCGCGGCAAAAATCTA
TGCCGTCGATGTCGGGCATGGCCAACTGGCCTGGAAGCTGCGCAGCGACCCGCGCGTGACGGTGCTGGAAAAATGCAACG
CCCGCGCGCTGGATGCGACGACGATCCCCGACCCGATCGACGTGCTGGTCTGCGATGCCAGCTTCATCGGCCTGCGCACG
GTCCTGCCCGCCGGGCTGGCGTTGTGCCGTCCGGGCGCCGGGGCCGTGGCCCTGATCAAGCCGCAATTCGAGGCCGGGCG
CGACGCGGTGGGGCCAAAGGGCGTGGTGCGCGACCCCGCGATCCATGACGCGGTCTGCGCCACCATCCGCGACTGGTGGT
CCGCCATGCCCGGCTGGACGGTGCTGGGGATCGAACCCAGCCCGATCACGGGCCCGGAAGGCAACCGCGAATTCCTGATC
GCCGCGCGGCGGGACGGATAG

Upstream 100 bases:

>100_bases
ACGCCCCAGCCATCGCCGCATGCGCCATGCAGGCCCTGGGGGTTGCCGCGTCCCAACAGACGGCCTGACCGCCCCCGGAA
AGGAACGAAGGGGCGCACAG

Downstream 100 bases:

>100_bases
TAATTCCCCCATTTGCGTCCGGATGTGATAGGCAGCGCGGATTCCGCCCTTCGCCCACGTCCGTTGCATGAGTACCTGTC
CATGACCGCCGTTCCCGCCC

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQLPEDAPLRLKGQDHPWVSRGGIKLAHALAHFGLSPE
GGICLDVGASTGGFTDVLLTHGAAKIYAVDVGHGQLAWKLRSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRT
VLPAGLALCRPGAGAVALIKPQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPGWTVLGIEPSPITGPEGNREFLI
AARRDG

Sequences:

>Translated_246_residues
MAKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQLPEDAPLRLKGQDHPWVSRGGIKLAHALAHFGLSPE
GGICLDVGASTGGFTDVLLTHGAAKIYAVDVGHGQLAWKLRSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRT
VLPAGLALCRPGAGAVALIKPQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPGWTVLGIEPSPITGPEGNREFLI
AARRDG
>Mature_245_residues
AKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQLPEDAPLRLKGQDHPWVSRGGIKLAHALAHFGLSPEG
GICLDVGASTGGFTDVLLTHGAAKIYAVDVGHGQLAWKLRSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRTV
LPAGLALCRPGAGAVALIKPQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPGWTVLGIEPSPITGPEGNREFLIA
ARRDG

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25982; Mature: 25851

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQLPEDAPLRLKGQDHPW
CCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCCC
VSRGGIKLAHALAHFGLSPEGGICLDVGASTGGFTDVLLTHGAAKIYAVDVGHGQLAWKL
CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEE
RSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRTVLPAGLALCRPGAGAVALIK
CCCCCEEEEECCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEC
PQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPGWTVLGIEPSPITGPEGNREFLI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEE
AARRDG
EEECCC
>Mature Secondary Structure 
AKQRADQMLVDRGLVESRTRAQALILAGLVFSGDRRVAKAGDQLPEDAPLRLKGQDHPW
CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCEEEECCCCCC
VSRGGIKLAHALAHFGLSPEGGICLDVGASTGGFTDVLLTHGAAKIYAVDVGHGQLAWKL
CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEEEEE
RSDPRVTVLEKCNARALDATTIPDPIDVLVCDASFIGLRTVLPAGLALCRPGAGAVALIK
CCCCCEEEEECCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEC
PQFEAGRDAVGPKGVVRDPAIHDAVCATIRDWWSAMPGWTVLGIEPSPITGPEGNREFLI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEE
AARRDG
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]