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The map label for this gene is rlpA [H]

Identifier: 162147580

GI number: 162147580

Start: 1827573

End: 1828412

Strand: Direct

Name: rlpA [H]

Synonym: GDI_1796

Alternate gene names: 162147580

Gene position: 1827573-1828412 (Clockwise)

Preceding gene: 162147579

Following gene: 162147581

Centisome position: 46.34

GC content: 71.43

Gene sequence:

>840_bases
ATGGCCGCGCTGGGACTGCTGGGCTGCCATCGGGCGGAGCCCGGGCTGCCCCCTGCGGCGCCGCATTACGTCGTCGGCGC
GCCGTACCAGATGGACGGCGTGTGGTACTACCCGCACGAGGATTTCTCCTATCAGGCGACCGGCCTGGCCGTCGCCGACC
CGGACCGCACGCCCTACGTCACGGCGGATGGCGAGCATTACAGCCCCGATGCCCTGACCGGCCGCCATGCGACGCTGCAG
CTTCCGGCCATCGTCACGGTGCGCAACCTGGAAAACGGGCGTGAAATCACCATCCGGGTGAATGACCGGGGACCGGATTC
GCCGGGCCGGCTGATCGGCCTGTCGCCCAGGGCCGCCGCCCTGCTGGGGATCGGCAGCAATCCGGTGCGGGTCGCGGTCA
CGGGACTGGAAGCGCAGAACGAGCAACTGGCCGAGGGTCTGCCGGGCACCCAGCACCTGGATATCGCGGCGGCGCCGGCC
GGCCAGGTCCGTGCCGAATCGCTGGACCATCCGGGCAGCGGGGCCACGATCGTCGGCGCCCCCGGCGGGACGGTGGGGGC
GGCGGATATCTCGGCCCTGATGGGCGACCTGCCTCCCAGCGTGCGCCAGGGCTATGTGGTGGGCGGGCTGCTGTGGGTCG
ATGCCGGCACGTTTTCGACCCTGCGCTATGCCGAACTGTCGGCCGCGCGGACCGGCGGCCGCGTCGTGCCGGTCCAGGAA
CACGGACGGGCGCTGTGGCGGGTCCATGTCGGGCCGTTCATGAACGCGACCGACGCCGACCGCGCACTGGACCAGCTTAT
GGGCGCCGGAGTAACCGGTGCCCGGATCGTCGTCGAATAG

Upstream 100 bases:

>100_bases
TTTCGGTCATCCGGCGCTACAATCCATCCGATTTCTACGCGCTGGCGGTCGGGCTGCTGGGCCACGACGTCACGTGACGC
GCCGGGCCGTTCCCACGGTA

Downstream 100 bases:

>100_bases
GGATGAACGTGCAGACCCGAAGGTTCCTCATGGCTGGGACGGCCTCGCTGGCCGCCACCGGTTCTCTTGCGGTTGCGGCG
CCGCGCCGGCACCACGCGCA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MAALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSYQATGLAVADPDRTPYVTADGEHYSPDALTGRHATLQ
LPAIVTVRNLENGREITIRVNDRGPDSPGRLIGLSPRAAALLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPA
GQVRAESLDHPGSGATIVGAPGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTFSTLRYAELSAARTGGRVVPVQE
HGRALWRVHVGPFMNATDADRALDQLMGAGVTGARIVVE

Sequences:

>Translated_279_residues
MAALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSYQATGLAVADPDRTPYVTADGEHYSPDALTGRHATLQ
LPAIVTVRNLENGREITIRVNDRGPDSPGRLIGLSPRAAALLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPA
GQVRAESLDHPGSGATIVGAPGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTFSTLRYAELSAARTGGRVVPVQE
HGRALWRVHVGPFMNATDADRALDQLMGAGVTGARIVVE
>Mature_278_residues
AALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSYQATGLAVADPDRTPYVTADGEHYSPDALTGRHATLQL
PAIVTVRNLENGREITIRVNDRGPDSPGRLIGLSPRAAALLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPAG
QVRAESLDHPGSGATIVGAPGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTFSTLRYAELSAARTGGRVVPVQEH
GRALWRVHVGPFMNATDADRALDQLMGAGVTGARIVVE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=101, Percent_Identity=41.5841584158416, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 28994; Mature: 28863

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSYQATGLAVADPDRTPYV
CCCCCCCCCCCCCCCCCCCCCCEEEECCEEECCEEECCCCCCCEEECEEEEECCCCCCEE
TADGEHYSPDALTGRHATLQLPAIVTVRNLENGREITIRVNDRGPDSPGRLIGLSPRAAA
EECCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEE
LLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPAGQVRAESLDHPGSGATIVGA
EEECCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHCCCCCCCCCEEEEC
PGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTFSTLRYAELSAARTGGRVVPVQE
CCCCCCHHHHHHHHHCCCHHHHCCEEEEEEEEEECCCCCEEEEHHHHHHCCCCEEEEEHH
HGRALWRVHVGPFMNATDADRALDQLMGAGVTGARIVVE
CCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
AALGLLGCHRAEPGLPPAAPHYVVGAPYQMDGVWYYPHEDFSYQATGLAVADPDRTPYV
CCCCCCCCCCCCCCCCCCCCCEEEECCEEECCEEECCCCCCCEEECEEEEECCCCCCEE
TADGEHYSPDALTGRHATLQLPAIVTVRNLENGREITIRVNDRGPDSPGRLIGLSPRAAA
EECCCCCCCCCCCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCCEE
LLGIGSNPVRVAVTGLEAQNEQLAEGLPGTQHLDIAAAPAGQVRAESLDHPGSGATIVGA
EEECCCCCEEEEEECCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHCCCCCCCCCEEEEC
PGGTVGAADISALMGDLPPSVRQGYVVGGLLWVDAGTFSTLRYAELSAARTGGRVVPVQE
CCCCCCHHHHHHHHHCCCHHHHCCEEEEEEEEEECCCCCEEEEHHHHHHCCCCEEEEEHH
HGRALWRVHVGPFMNATDADRALDQLMGAGVTGARIVVE
CCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]