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The map label for this gene is sdhD [H]

Identifier: 162147200

GI number: 162147200

Start: 1407470

End: 1407892

Strand: Reverse

Name: sdhD [H]

Synonym: GDI_1405

Alternate gene names: 162147200

Gene position: 1407892-1407470 (Counterclockwise)

Preceding gene: 162147201

Following gene: 162147199

Centisome position: 35.7

GC content: 65.01

Gene sequence:

>423_bases
ATGAACGCGTCCCATACGCCGCGCATGGATGTCATGCGCTCGCAATTGTCCCGGGCACGGGGACTGGGCTCGGCCAAGAC
CGGGGTGGACCATTGGTGGATGGAGCGGATGTCCGCCGTCGCCCTGGTGCCGCTGTCGGGCTGGTTCGTGCTGCAGGTCC
TGCGCCTGGCGGGCTCCAGCCAGGAAGATGTCGTGGAATGGGGCGGCAAGCCCGTCAATTCCTCGATGCTGCTGGCCCTG
ATGGTCCTGACCTTCTACCACATGCAGCTGGGCCTGCAGGTCATCATCGATGACTATGTGCATGGCAAGGCGCATCTGCC
GGTCAGCCTGCTGATGAAGGGCGCCGCCTTCCTGATCGGGCTGTTCGCCGTGATCGCCGTCCTGAAGCTGGCACTGGCCC
CGTCGCGCAAGGCAATCGCCTGA

Upstream 100 bases:

>100_bases
CCCATCGCGGTGGGCGTGACGGTGGGGACGACGCTGGCGCTCGTCGCCACCATCTTCGGCCTTGCGGCCTGCCGTTCCAG
AAAGAAGAAGGCATCCTGAC

Downstream 100 bases:

>100_bases
CATGGCGGATCGGGCCCGCGCGGTCCGTGAGTACAGAGACAGCGATACAGAGACAGTTCCGGCCCGGCGGCGACACAAGC
CGTCCCGCGGGCCGGACGAG

Product: succinate dehydrogenase hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNASHTPRMDVMRSQLSRARGLGSAKTGVDHWWMERMSAVALVPLSGWFVLQVLRLAGSSQEDVVEWGGKPVNSSMLLAL
MVLTFYHMQLGLQVIIDDYVHGKAHLPVSLLMKGAAFLIGLFAVIAVLKLALAPSRKAIA

Sequences:

>Translated_140_residues
MNASHTPRMDVMRSQLSRARGLGSAKTGVDHWWMERMSAVALVPLSGWFVLQVLRLAGSSQEDVVEWGGKPVNSSMLLAL
MVLTFYHMQLGLQVIIDDYVHGKAHLPVSLLMKGAAFLIGLFAVIAVLKLALAPSRKAIA
>Mature_140_residues
MNASHTPRMDVMRSQLSRARGLGSAKTGVDHWWMERMSAVALVPLSGWFVLQVLRLAGSSQEDVVEWGGKPVNSSMLLAL
MVLTFYHMQLGLQVIIDDYVHGKAHLPVSLLMKGAAFLIGLFAVIAVLKLALAPSRKAIA

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15266; Mature: 15266

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASHTPRMDVMRSQLSRARGLGSAKTGVDHWWMERMSAVALVPLSGWFVLQVLRLAGSS
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
QEDVVEWGGKPVNSSMLLALMVLTFYHMQLGLQVIIDDYVHGKAHLPVSLLMKGAAFLIG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LFAVIAVLKLALAPSRKAIA
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNASHTPRMDVMRSQLSRARGLGSAKTGVDHWWMERMSAVALVPLSGWFVLQVLRLAGSS
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
QEDVVEWGGKPVNSSMLLALMVLTFYHMQLGLQVIIDDYVHGKAHLPVSLLMKGAAFLIG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LFAVIAVLKLALAPSRKAIA
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA