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The map label for this gene is sdhC [H]

Identifier: 162147201

GI number: 162147201

Start: 1407894

End: 1408355

Strand: Reverse

Name: sdhC [H]

Synonym: GDI_1406

Alternate gene names: 162147201

Gene position: 1408355-1407894 (Counterclockwise)

Preceding gene: 162147202

Following gene: 162147200

Centisome position: 35.71

GC content: 62.34

Gene sequence:

>462_bases
ATGCAGGATGTCCGTGATGCGCTCTATATAGGGCACCGAAGCGACGGAACACTGACCCGGCGACCCATGTCCCCGCATCT
CCAGGTCTATCGCTTCCGACTTTCAATGTTCCTTTCAATCGCGAACCGGGCAGCCGGCGTCGCGGCGGCCGCCGGTTCGG
TACTCGGCGTGTGCTGGCTGAATGCAGCCGCGAAAGGCCCTGAATCCTTCAAGAAGGTTCAGAAGGTTACCCGCAATCCC
CTGGGCAAGCTGGCCCTTGTGGGCTGGACGCTGTCGCTGGTCTATCATTTCGTCGCGGGCCTGCGCCATCTCTCGTGGGA
TGCCGGCTACCGCTTCGAGAAGAAAGAGATCAACGAGGACGGGCCCATCGCGGTGGGCGTGACGGTGGGGACGACGCTGG
CGCTCGTCGCCACCATCTTCGGCCTTGCGGCCTGCCGTTCCAGAAAGAAGAAGGCATCCTGA

Upstream 100 bases:

>100_bases
CCCCTGCGTTGACCGCGCCCCCTCCCCGGCGTAGGACCGATACAGACACAAGGCGACGGAACAAACCGGAGCCATAATCA
GGGAAATCGACGAGACGACC

Downstream 100 bases:

>100_bases
CATGAACGCGTCCCATACGCCGCGCATGGATGTCATGCGCTCGCAATTGTCCCGGGCACGGGGACTGGGCTCGGCCAAGA
CCGGGGTGGACCATTGGTGG

Product: succinate dehydrogenase cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MQDVRDALYIGHRSDGTLTRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKKVQKVTRNP
LGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTLALVATIFGLAACRSRKKKAS

Sequences:

>Translated_153_residues
MQDVRDALYIGHRSDGTLTRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKKVQKVTRNP
LGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTLALVATIFGLAACRSRKKKAS
>Mature_153_residues
MQDVRDALYIGHRSDGTLTRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWLNAAAKGPESFKKVQKVTRNP
LGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINEDGPIAVGVTVGTTLALVATIFGLAACRSRKKKAS

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 16613; Mature: 16613

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDVRDALYIGHRSDGTLTRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWL
CCCHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAAAKGPESFKKVQKVTRNPLGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINED
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC
GPIAVGVTVGTTLALVATIFGLAACRSRKKKAS
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQDVRDALYIGHRSDGTLTRRPMSPHLQVYRFRLSMFLSIANRAAGVAAAAGSVLGVCWL
CCCHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAAAKGPESFKKVQKVTRNPLGKLALVGWTLSLVYHFVAGLRHLSWDAGYRFEKKEINED
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCC
GPIAVGVTVGTTLALVATIFGLAACRSRKKKAS
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA