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The map label for this gene is yliC [C]

Identifier: 162146289

GI number: 162146289

Start: 462533

End: 463504

Strand: Direct

Name: yliC [C]

Synonym: GDI_0464

Alternate gene names: 162146289

Gene position: 462533-463504 (Clockwise)

Preceding gene: 162146288

Following gene: 162146290

Centisome position: 11.73

GC content: 68.11

Gene sequence:

>972_bases
ATGAACCGGTTTTCGCGCCACCTGATCGTGCTGCGGCTGGCGGGCCTGCGCATCCTGTCCGCGCTGGGCACGCTCCTGCT
GGTGACCATCCTGATCTTCGCCGCGACCAGCTTCCTGCCCGGCGATGCCGCGCAGGCCATCCTGGGACGCAGCGCGACAC
CGGAAGCGGCGGCCGCGCTGCGCCATTCCCTGCATCTGGACCAGCCCGGATGGTGGCGGTTCCTGGTCTGGATCGGCGGG
ATGCTGCACGGTGATCCCGGCTATTCCCTGATCAACCACGCCCCGGTGCGCGCGCTGATCGGGCAGCGGCTGCCGCATTC
GCTGCTGCTGGCCGGGCTGACGGCCCTGGTCACGGTGCCCACGGCGCTGGTCCTGGGCATCACCTCCGCCGTCTTCCGCC
AGAGCTGGTATGACCGCACGGTGGCGTCGGCGACGATCGCGGTCGTGTCCCTGCCGGAATTCCTGGTCGCCACTTTCGCG
GTCCTGGTCTTCGCCGTGGAACTGCGCTGGCTGCCGGCGCTGTCGGACACGACGCAGGTGCATGGGCCGGGCGATTTCCT
GCGGGCCTTCGCCATGCCGGTCATCAGCCTGAGCTGCGTGGTGATCGCCCAGATGATCCGCATGACGCGGGCCGCGATGT
GCGACGCACTGGACGCGCCCTATATCGAGATGGCGCGCCTGAAGGGCTGCGGCCCGGTCAGGCTGGTCCTGGTGCATGCG
CTTCCGAACACGATCGGGGCGCTGCTGAACATCATCGCGCTCAGCCTGTCCGGGCTGCTGGGCGGCGTCGTGGTGATCGA
GACCGTGTTCGATTACCCGGGCCTCGCGAAACTGATGGTGGATGCCGTGGCAACGCGCGACATGCCCGTCATCCAGGCCT
GCGCCCTGATTTTCTGCGGGACCTACCTGGTGCTGATCACGCTGGCCGATGTCGCATCCATACTCGGCAACCCGCGCAGG
AGGCGTTCTTGA

Upstream 100 bases:

>100_bases
GTGATATCGACGCGTTTTCACCCCGGCTGCGCGGCATGCGGCCCAGGAAGACGGGGGAATTCATGGGCTTCGAATTCGCC
CGCCATGTCTGGCTGGCGTC

Downstream 100 bases:

>100_bases
CCGAGCCGGTTCTGAATGACGAGGCGGGCATGGTCGCCGCGACGATCGCGGGCCCGGCGCGGCCATGGCGCCGGGCGGTG
ACCGGGCGGCAGGGGGTCGC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MNRFSRHLIVLRLAGLRILSALGTLLLVTILIFAATSFLPGDAAQAILGRSATPEAAAALRHSLHLDQPGWWRFLVWIGG
MLHGDPGYSLINHAPVRALIGQRLPHSLLLAGLTALVTVPTALVLGITSAVFRQSWYDRTVASATIAVVSLPEFLVATFA
VLVFAVELRWLPALSDTTQVHGPGDFLRAFAMPVISLSCVVIAQMIRMTRAAMCDALDAPYIEMARLKGCGPVRLVLVHA
LPNTIGALLNIIALSLSGLLGGVVVIETVFDYPGLAKLMVDAVATRDMPVIQACALIFCGTYLVLITLADVASILGNPRR
RRS

Sequences:

>Translated_323_residues
MNRFSRHLIVLRLAGLRILSALGTLLLVTILIFAATSFLPGDAAQAILGRSATPEAAAALRHSLHLDQPGWWRFLVWIGG
MLHGDPGYSLINHAPVRALIGQRLPHSLLLAGLTALVTVPTALVLGITSAVFRQSWYDRTVASATIAVVSLPEFLVATFA
VLVFAVELRWLPALSDTTQVHGPGDFLRAFAMPVISLSCVVIAQMIRMTRAAMCDALDAPYIEMARLKGCGPVRLVLVHA
LPNTIGALLNIIALSLSGLLGGVVVIETVFDYPGLAKLMVDAVATRDMPVIQACALIFCGTYLVLITLADVASILGNPRR
RRS
>Mature_323_residues
MNRFSRHLIVLRLAGLRILSALGTLLLVTILIFAATSFLPGDAAQAILGRSATPEAAAALRHSLHLDQPGWWRFLVWIGG
MLHGDPGYSLINHAPVRALIGQRLPHSLLLAGLTALVTVPTALVLGITSAVFRQSWYDRTVASATIAVVSLPEFLVATFA
VLVFAVELRWLPALSDTTQVHGPGDFLRAFAMPVISLSCVVIAQMIRMTRAAMCDALDAPYIEMARLKGCGPVRLVLVHA
LPNTIGALLNIIALSLSGLLGGVVVIETVFDYPGLAKLMVDAVATRDMPVIQACALIFCGTYLVLITLADVASILGNPRR
RRS

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=305, Percent_Identity=34.4262295081967, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=30.4733727810651, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=30.379746835443, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=26.3843648208469, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1787761, Length=291, Percent_Identity=29.553264604811, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=24.1992882562278, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=27.4647887323944, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34580; Mature: 34580

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFSRHLIVLRLAGLRILSALGTLLLVTILIFAATSFLPGDAAQAILGRSATPEAAAAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
RHSLHLDQPGWWRFLVWIGGMLHGDPGYSLINHAPVRALIGQRLPHSLLLAGLTALVTVP
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TALVLGITSAVFRQSWYDRTVASATIAVVSLPEFLVATFAVLVFAVELRWLPALSDTTQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HGPGDFLRAFAMPVISLSCVVIAQMIRMTRAAMCDALDAPYIEMARLKGCGPVRLVLVHA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
LPNTIGALLNIIALSLSGLLGGVVVIETVFDYPGLAKLMVDAVATRDMPVIQACALIFCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TYLVLITLADVASILGNPRRRRS
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRFSRHLIVLRLAGLRILSALGTLLLVTILIFAATSFLPGDAAQAILGRSATPEAAAAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHH
RHSLHLDQPGWWRFLVWIGGMLHGDPGYSLINHAPVRALIGQRLPHSLLLAGLTALVTVP
HHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TALVLGITSAVFRQSWYDRTVASATIAVVSLPEFLVATFAVLVFAVELRWLPALSDTTQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HGPGDFLRAFAMPVISLSCVVIAQMIRMTRAAMCDALDAPYIEMARLKGCGPVRLVLVHA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
LPNTIGALLNIIALSLSGLLGGVVVIETVFDYPGLAKLMVDAVATRDMPVIQACALIFCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
TYLVLITLADVASILGNPRRRRS
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]