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The map label for this gene is ybbN [H]

Identifier: 162146016

GI number: 162146016

Start: 196952

End: 198070

Strand: Reverse

Name: ybbN [H]

Synonym: GDI_0184

Alternate gene names: 162146016

Gene position: 198070-196952 (Counterclockwise)

Preceding gene: 162146017

Following gene: 162146015

Centisome position: 5.02

GC content: 70.78

Gene sequence:

>1119_bases
TTGTGGGACAGGCGGGGGATGACAATGTTAGGTCTTGGTTTCATACGGCGCCGGGCCGCGGGTCGGCGGCTGGAACAAGA
CAAACAGGCAGGATCGGGTTCTATGGATTACATCATCGGTCAGTCCCGCGGCGGCCAGCGCGCTACCGGCGGCCTGGTGG
ACGAGGCAGGCGTTCCCGCCGCGCCGTCGGGGATGGCCGGAGCGCCGGCCGGGCCCGGCGGGAATGGTGCGATGATCGTC
GACGGCACCCAGGACACCTTCATGCAGGATGTCCTGGAGGCCAGCCGTACCCTGCCGGTCCTGGTCGATTTCTGGGCCAC
CTGGTGCGGGCCGTGCCGCCAGTTGACCCCGGTGCTGGAAAAGATCGTCCGGTCGGCCGGCGGCCGCGTGAAGCTGGTCA
AGATCGATGTCGACGCCAACCGGGCCCTGGCCCAGCAACTGACCCAGGTCGGGCTGCCGCTGCAGTCCATCCCGCTGGTG
GCCGCCTTCTGGCAGGGGCAGATCCTGGACCTGTTCCAGGGCGCGCAGCCGGAAAGCGAGATCAAGCGCTTCGTCGAAGG
ACTGCTGAAGGCCGCGGGCGGCGGCAGCATGCCGGCGGCGGACCTGATCGTCGCGGCCCGCGCGGCGCTGGAGGCCGGCA
GCGCCGAGGAAGCGGCCGGCCTGTATGCCCAGACCCTGGAGATCGAACCCGAAAACGCCGCCGCCTGGGGCGGCCTGGTG
CGGGCGCTGATCGTGATGGGGGACGAGGACGCCGCCGAGGCCGCACTGGCCGACGTGCCGGCCAGGATTGCCGACCATGC
CGAGATCACCGGCGCCCGCGCCGCGCTGGACCTGAAGCGCGAGGGCCGCAAGGCCGCCGAGGCATCCGAAGGGCTGCGCC
GGCGGCTGGCCGCGAATCCGGCGGACCACGAGGCCCGCTACGAACTGGCCGCCGCCCTGAACGCGGCCGGCCACCGGCAG
GAAGCCGCCGACGAACTGCTGACCATCATGCGCCAGGACCGTGCCTGGAACGACGATGCGGCGCGGCTGCAATTGATCCG
GCTGTTCGAGTCCTGGGGCCATGACGACCCGGCGACCCTGCAGGCCCGGCGGCGTATGTCCGCGCTGCTGTTTTCATGA

Upstream 100 bases:

>100_bases
CCGCACCGTGTCGGTGGAGGGGGGTGTAAGGGAAAGCGAACTGCCTGACAAGGGGGGAAATTCATCTTTTGCGTTTTTTG
CGCGTGGGGGGTGCTGCGGC

Downstream 100 bases:

>100_bases
TGCGGGGGGCGGCACGGCATTGAGCGGCGACGATATTCCGCGCGCCGTGCCGCGCCCGCACGACATGACGCTGGCGGACC
TGCCGCCCGAACTGGGATTG

Product: thioredoxin protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MWDRRGMTMLGLGFIRRRAAGRRLEQDKQAGSGSMDYIIGQSRGGQRATGGLVDEAGVPAAPSGMAGAPAGPGGNGAMIV
DGTQDTFMQDVLEASRTLPVLVDFWATWCGPCRQLTPVLEKIVRSAGGRVKLVKIDVDANRALAQQLTQVGLPLQSIPLV
AAFWQGQILDLFQGAQPESEIKRFVEGLLKAAGGGSMPAADLIVAARAALEAGSAEEAAGLYAQTLEIEPENAAAWGGLV
RALIVMGDEDAAEAALADVPARIADHAEITGARAALDLKREGRKAAEASEGLRRRLAANPADHEARYELAAALNAAGHRQ
EAADELLTIMRQDRAWNDDAARLQLIRLFESWGHDDPATLQARRRMSALLFS

Sequences:

>Translated_372_residues
MWDRRGMTMLGLGFIRRRAAGRRLEQDKQAGSGSMDYIIGQSRGGQRATGGLVDEAGVPAAPSGMAGAPAGPGGNGAMIV
DGTQDTFMQDVLEASRTLPVLVDFWATWCGPCRQLTPVLEKIVRSAGGRVKLVKIDVDANRALAQQLTQVGLPLQSIPLV
AAFWQGQILDLFQGAQPESEIKRFVEGLLKAAGGGSMPAADLIVAARAALEAGSAEEAAGLYAQTLEIEPENAAAWGGLV
RALIVMGDEDAAEAALADVPARIADHAEITGARAALDLKREGRKAAEASEGLRRRLAANPADHEARYELAAALNAAGHRQ
EAADELLTIMRQDRAWNDDAARLQLIRLFESWGHDDPATLQARRRMSALLFS
>Mature_372_residues
MWDRRGMTMLGLGFIRRRAAGRRLEQDKQAGSGSMDYIIGQSRGGQRATGGLVDEAGVPAAPSGMAGAPAGPGGNGAMIV
DGTQDTFMQDVLEASRTLPVLVDFWATWCGPCRQLTPVLEKIVRSAGGRVKLVKIDVDANRALAQQLTQVGLPLQSIPLV
AAFWQGQILDLFQGAQPESEIKRFVEGLLKAAGGGSMPAADLIVAARAALEAGSAEEAAGLYAQTLEIEPENAAAWGGLV
RALIVMGDEDAAEAALADVPARIADHAEITGARAALDLKREGRKAAEASEGLRRRLAANPADHEARYELAAALNAAGHRQ
EAADELLTIMRQDRAWNDDAARLQLIRLFESWGHDDPATLQARRRMSALLFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=102, Percent_Identity=37.2549019607843, Blast_Score=72, Evalue=9e-13,
Organism=Escherichia coli, GI87081747, Length=294, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788936, Length=82, Percent_Identity=39.0243902439024, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082331, Length=111, Percent_Identity=32.4324324324324, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI212646193, Length=118, Percent_Identity=35.5932203389831, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 39543; Mature: 39543

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWDRRGMTMLGLGFIRRRAAGRRLEQDKQAGSGSMDYIIGQSRGGQRATGGLVDEAGVPA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
APSGMAGAPAGPGGNGAMIVDGTQDTFMQDVLEASRTLPVLVDFWATWCGPCRQLTPVLE
CCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
KIVRSAGGRVKLVKIDVDANRALAQQLTQVGLPLQSIPLVAAFWQGQILDLFQGAQPESE
HHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCHHH
IKRFVEGLLKAAGGGSMPAADLIVAARAALEAGSAEEAAGLYAQTLEIEPENAAAWGGLV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCHHHHHHHH
RALIVMGDEDAAEAALADVPARIADHAEITGARAALDLKREGRKAAEASEGLRRRLAANP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADHEARYELAAALNAAGHRQEAADELLTIMRQDRAWNDDAARLQLIRLFESWGHDDPATL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
QARRRMSALLFS
HHHHHHHHHHCC
>Mature Secondary Structure
MWDRRGMTMLGLGFIRRRAAGRRLEQDKQAGSGSMDYIIGQSRGGQRATGGLVDEAGVPA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC
APSGMAGAPAGPGGNGAMIVDGTQDTFMQDVLEASRTLPVLVDFWATWCGPCRQLTPVLE
CCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
KIVRSAGGRVKLVKIDVDANRALAQQLTQVGLPLQSIPLVAAFWQGQILDLFQGAQPESE
HHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHCCCCCHHH
IKRFVEGLLKAAGGGSMPAADLIVAARAALEAGSAEEAAGLYAQTLEIEPENAAAWGGLV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCHHHHHHHH
RALIVMGDEDAAEAALADVPARIADHAEITGARAALDLKREGRKAAEASEGLRRRLAANP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ADHEARYELAAALNAAGHRQEAADELLTIMRQDRAWNDDAARLQLIRLFESWGHDDPATL
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
QARRRMSALLFS
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]