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The map label for this gene is ydeP [H]

Identifier: 162146017

GI number: 162146017

Start: 198376

End: 198786

Strand: Reverse

Name: ydeP [H]

Synonym: GDI_0185

Alternate gene names: 162146017

Gene position: 198786-198376 (Counterclockwise)

Preceding gene: 162146029

Following gene: 162146016

Centisome position: 5.04

GC content: 62.53

Gene sequence:

>411_bases
ATGCCCCGCATTCGTCACAGGCGCCTCGACTGCAGCCCCGGCTGCGCCGTGGAAGCGACGCTCGAACTGATCGACGGGAA
GTGGAAAGGAGTCATCCTTTTCCATCTTCTGCAGGGAACCATGCGCTTCAACGCCATCCGAAAGCGTTTGCCGAACGTCA
CGCCGCGCATGCTGACAGCGCAATTACGCGAACTGGAGCACGATGGGTTCGTTCTACGGACGGTCTACGCCGAAGTACCG
CCCAAGGTGGAATACACCCTCACCGAGCGCGGCCGGAGCCTTGAGCCCGTCATCATGGCGCTGAAAAGCTGGGGCGATGC
GCATACCAGCTTCGATCCTGCTTCGGCAGATCGTGCCACTGGCGGGACAGGGGCAGGACCACCGGATAGCTGGCCCGCGT
GCCGTTCCTGA

Upstream 100 bases:

>100_bases
GGGTTTCGCTCCATCGTTGAATGGAGGGAAGATGGAGCGTTATGTTCGGCATACGCAAGAACGCACATATAATGCTCATA
GTATCGGAAATGATACCGTC

Downstream 100 bases:

>100_bases
GCAGATGATCCGCACGCAGAAAATGAGGGGCTGTGCGCGCGGGAGCGTGCCGGCCTGGTGTCGGCCAGGCCCCAATACGA
CGAAAGCCGCCTTGCGGCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MPRIRHRRLDCSPGCAVEATLELIDGKWKGVILFHLLQGTMRFNAIRKRLPNVTPRMLTAQLRELEHDGFVLRTVYAEVP
PKVEYTLTERGRSLEPVIMALKSWGDAHTSFDPASADRATGGTGAGPPDSWPACRS

Sequences:

>Translated_136_residues
MPRIRHRRLDCSPGCAVEATLELIDGKWKGVILFHLLQGTMRFNAIRKRLPNVTPRMLTAQLRELEHDGFVLRTVYAEVP
PKVEYTLTERGRSLEPVIMALKSWGDAHTSFDPASADRATGGTGAGPPDSWPACRS
>Mature_135_residues
PRIRHRRLDCSPGCAVEATLELIDGKWKGVILFHLLQGTMRFNAIRKRLPNVTPRMLTAQLRELEHDGFVLRTVYAEVPP
KVEYTLTERGRSLEPVIMALKSWGDAHTSFDPASADRATGGTGAGPPDSWPACRS

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=90, Percent_Identity=37.7777777777778, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15138; Mature: 15006

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRIRHRRLDCSPGCAVEATLELIDGKWKGVILFHLLQGTMRFNAIRKRLPNVTPRMLTA
CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QLRELEHDGFVLRTVYAEVPPKVEYTLTERGRSLEPVIMALKSWGDAHTSFDPASADRAT
HHHHHCCCCEEEEEEHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
GGTGAGPPDSWPACRS
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRIRHRRLDCSPGCAVEATLELIDGKWKGVILFHLLQGTMRFNAIRKRLPNVTPRMLTA
CCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QLRELEHDGFVLRTVYAEVPPKVEYTLTERGRSLEPVIMALKSWGDAHTSFDPASADRAT
HHHHHCCCCEEEEEEHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCC
GGTGAGPPDSWPACRS
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]