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The map label for this gene is yjfH [C]

Identifier: 161524445

GI number: 161524445

Start: 1401494

End: 1402276

Strand: Direct

Name: yjfH [C]

Synonym: Bmul_1272

Alternate gene names: 161524445

Gene position: 1401494-1402276 (Clockwise)

Preceding gene: 161524444

Following gene: 161524447

Centisome position: 40.64

GC content: 70.24

Gene sequence:

>783_bases
ATGAAAGCCATTACGTCAAGGGACAACCCGCTCTACAAGCGCCTGAAGGCGCTCGCGGGTTCGACGCCCCATCAGCGCCG
CAGCGGGCAGGCGCTGCTCGAAGGATTCCACCTCGCGAGCGCCTATCTCGATACGGGCGCGATACCCGAGCTGTGCGTCG
CGACCGAAGGCGCGCTCGGCCATGCGGAAGCGCAGGCGATCGTCGCGCGCATCGACGCGCAGCGCATCGTGACGCTGCCC
GATGCGCTGTTCGGACAGTTGTCGAACGTCGTCAACGGCGTCGGTTTCCTGCTGCTCGTCGATCGCCCGTCGCAGCCGCT
GCCGGCGCGCGTCGCGCACACGTCGGTCGTGCTCGACGGCGTGCAGGACGCCGGCAACGTCGGCTCGATCCTGCGCAGTG
CGGCGGCGGCCGGCGTGCGGCACGTGTTCTGCGCGCCCGGCACCGCCTATGCGTGGTCGTCGAAGGTGCTGCGTGCGGGC
ATGGGCGCGCATTTCCTGCTGTCGATCCACGAGGACGTCGCGCCCGACGCGCTCGCGGCGCGGCTCGACGTGCCGGTCGC
GCTGACCGATTCGCACGGCGCGCAGGCGATCTACGACTGCGACCTGTCGCAACCGGTCGCGTGGGTGTTCGGCAACGAAG
GCGCGGGCGTGTCGGCGTTCTGGCGCGACATCGCCGCCCATCGTGTGACGATTCCGCAGCCGGGCGGCATGGAGTCGCTG
AACGTCGCGGCGGCTGCCGCGGTATGTCTGTTCGAGCAGGTCCGGCAGCAGCGGCGCGCTTGA

Upstream 100 bases:

>100_bases
ACGGCACCCCGCAACATCTTGCCGCGCTGCGCGAGCACGGCCCGTGCGAAGCGCATCGGCGTTCGTTCGCGCCCGTGCGC
GAAGCGCTCGATCTGATTCG

Downstream 100 bases:

>100_bases
GCTCGCGCACACATCGCCGCGCGCATCGCGGCGAGAACGAAAAAAGGCCGCGTCGAACGCGGCCTTTTTGCTTCGGGCGG
GACGATCCGCCGCGACGATC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCVATEGALGHAEAQAIVARIDAQRIVTLP
DALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAG
MGAHFLLSIHEDVAPDALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESL
NVAAAAAVCLFEQVRQQRRA

Sequences:

>Translated_260_residues
MKAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCVATEGALGHAEAQAIVARIDAQRIVTLP
DALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAG
MGAHFLLSIHEDVAPDALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESL
NVAAAAAVCLFEQVRQQRRA
>Mature_260_residues
MKAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCVATEGALGHAEAQAIVARIDAQRIVTLP
DALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVLDGVQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAG
MGAHFLLSIHEDVAPDALAARLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESL
NVAAAAAVCLFEQVRQQRRA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=302, Percent_Identity=28.476821192053, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790623, Length=145, Percent_Identity=29.6551724137931, Blast_Score=67, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24666840, Length=292, Percent_Identity=27.7397260273973, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27294; Mature: 27294

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCVATEGALG
CCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC
HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVLDG
HHHHHHHHHHHCHHHEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHC
VQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAPDALAA
CCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHCCCHHHHHH
RLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESL
HCCCCEEEECCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCEEECCCCCCCCHH
NVAAAAAVCLFEQVRQQRRA
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKAITSRDNPLYKRLKALAGSTPHQRRSGQALLEGFHLASAYLDTGAIPELCVATEGALG
CCCCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCC
HAEAQAIVARIDAQRIVTLPDALFGQLSNVVNGVGFLLLVDRPSQPLPARVAHTSVVLDG
HHHHHHHHHHHCHHHEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHC
VQDAGNVGSILRSAAAAGVRHVFCAPGTAYAWSSKVLRAGMGAHFLLSIHEDVAPDALAA
CCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHCCCHHHHHH
RLDVPVALTDSHGAQAIYDCDLSQPVAWVFGNEGAGVSAFWRDIAAHRVTIPQPGGMESL
HCCCCEEEECCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHCEEECCCCCCCCHH
NVAAAAAVCLFEQVRQQRRA
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]