Click here to switch to the map view.

The map label for this gene is rnhB [H]

Identifier: 161524444

GI number: 161524444

Start: 1400865

End: 1401497

Strand: Direct

Name: rnhB [H]

Synonym: Bmul_1271

Alternate gene names: 161524444

Gene position: 1400865-1401497 (Clockwise)

Preceding gene: 161524443

Following gene: 161524445

Centisome position: 40.62

GC content: 66.19

Gene sequence:

>633_bases
ATGACGGCGGGCCGCATCACGTTCGCCGATATGCAGGCGGGCTTCGATTTCAACCGCCCGGACGAGATCGTCTGCGGCGT
CGACGAAGCGGGGCGCGGGCCGCTCGCCGGGCCCGTCGTCGCGGCCGCGGTGATTCTCGATCCCGCCCGGCCGATCGACG
GGCTCGACGATTCGAAGGTGTTGTCCGCGAAGAAGCGCGATGCGCTGTACGAGTTGATCGTGTCGAATGCGCGTGCGTAT
TGCGTCGCATCGGCGAGCGTCGACGAAATCGACTCGCTGAACATCCTGCATGCGACGATGCTCGCGATGAAGCGTGCGGT
CGAAGGGCTGTCGGTGCTGCCGACGCTCGCACAGATCGACGGCAACCGCTGCCCGACGCTGTCGGTGCGCGCAGAGGCGA
TCGTCAGCGGCGATGCGCTCGTGCCGAGCATCTCGGCCGCATCGATCCTCGCGAAAGTCACGCGCGACCGCATGCTCGTC
GATCTGCACGAACGTTTTCCCGTCTACGGTTTCAACGTGCACGCAGGTTACGGCACCCCGCAACATCTTGCCGCGCTGCG
CGAGCACGGCCCGTGCGAAGCGCATCGGCGTTCGTTCGCGCCCGTGCGCGAAGCGCTCGATCTGATTCGATGA

Upstream 100 bases:

>100_bases
CCGAAGTGTTCACGGAGATGCACCTGTCGCTGCGGCAGAATACCGCCGCGAAGGCGGCCGAGGCCGTCGCGCGCGTGCTC
GACCAGCGCAAGAGGCGCGC

Downstream 100 bases:

>100_bases
AAGCCATTACGTCAAGGGACAACCCGCTCTACAAGCGCCTGAAGGCGCTCGCGGGTTCGACGCCCCATCAGCGCCGCAGC
GGGCAGGCGCTGCTCGAAGG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTAGRITFADMQAGFDFNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAY
CVASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLV
DLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAPVREALDLIR

Sequences:

>Translated_210_residues
MTAGRITFADMQAGFDFNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAY
CVASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLV
DLHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAPVREALDLIR
>Mature_209_residues
TAGRITFADMQAGFDFNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKVLSAKKRDALYELIVSNARAYC
VASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQIDGNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVD
LHERFPVYGFNVHAGYGTPQHLAALREHGPCEAHRRSFAPVREALDLIR

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=195, Percent_Identity=60, Blast_Score=217, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22454; Mature: 22323

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGRITFADMQAGFDFNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKV
CCCCCEEEEHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
LSAKKRDALYELIVSNARAYCVASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQID
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTP
CCCCCEEEEEHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCH
QHLAALREHGPCEAHRRSFAPVREALDLIR
HHHHHHHHCCCCHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
TAGRITFADMQAGFDFNRPDEIVCGVDEAGRGPLAGPVVAAAVILDPARPIDGLDDSKV
CCCCEEEEHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHH
LSAKKRDALYELIVSNARAYCVASASVDEIDSLNILHATMLAMKRAVEGLSVLPTLAQID
HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAGYGTP
CCCCCEEEEEHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCH
QHLAALREHGPCEAHRRSFAPVREALDLIR
HHHHHHHHCCCCHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA