| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is aceE [H]
Identifier: 160877158
GI number: 160877158
Start: 4784974
End: 4787640
Strand: Reverse
Name: aceE [H]
Synonym: Sbal195_4054
Alternate gene names: 160877158
Gene position: 4787640-4784974 (Counterclockwise)
Preceding gene: 160877159
Following gene: 160877157
Centisome position: 89.53
GC content: 47.58
Gene sequence:
>2667_bases ATGTCTGAAGATATGCTACAAGACGTAGATCCATTAGAGACTCAGGAATGGGTTGATGCCCTGCAAGCCGTGTTGGAACA GGAAGGCCCAGAGCGCGCGCATTTTTTACTAGAGAAGCTGATCGATAAAGCGCGTCGTAATGGCACTCACTTGCCTTACA ATGCCACAACGGCTTACTTGAACACTATCCCAGCGGGTCAAGAGCCTCACATGCCTGGCAACCAAGAGATGGAACGTCGC ATTCGCGCCATCATCCGTTGGAACGCTTTGGCTATGGTTCTGCGTGGTTCTAAGAAAGATTTAGAGTTGGGCGGCCATAT CTCAAGTTTCGCTTCAAGCGCGACTATCTATGACGTATGTTTTAACCACTTCTTCCGTGCACCGAATGAGAAAGACGGTG GCGATCTCGTGTATTTCCAAGGCCATATCGCCCCAGGTATTTATGCGCGTTCATTCCTAGAAGGTCGTTTAAGCGAAGAG CAACTGGCTAACTTCCGTCAAGAAGTGGATGGCAAGGGTCTGTCTTCATACCCACATCCAAAACTGATGCCGGATTACTG GCAATTTCCAACGGTTTCTATGGGCTTAGGTCCAATCCAAGCCATCTATCAAGCCCGTTTCCTGAAATATCTGACTGACC GTGGTCTGAAAGATTGTTCAGCACAAACTGTTTACTGTTTCTTAGGTGACGGTGAGTGTGACGAGCCAGAAGCCTTAGGT GCTATCGGGTTAGCGGCCCGTGAAGAATTAGATAACTTAGTCTTCATCGTTAACTGTAACTTACAGCGTCTTGATGGCCC TGTACGTGGTAACGGTAAGATCATCCAAGAACTTGAAGGCGAATTCCGCGGCGCAGGCTGGGAAGTCGTGAAAGTGATTT GGGGTCGTTACTGGGATCCATTATTGGCCCGTGACACCAGCGGTAAACTGCTGCAGTTGATGGAAGAAACCGTTGACGGT GAATACCAAAACTGTAAAGCCAAAGGTGGCGCTTATACGCGCGAACACTTCTTTGGTAAGTATCCTGAAACGGCCGAAAT GGTTGCGAACATGTCAGATGATGACATTTGGCGCTTAAACCGCGGCGGTCATGATCCAGTTAAAGTTTACGCTGCACTGG AACATGCACAAAAAACCAAAGGCCGTCCAACAGTTATCCTAGCTAAAACCGTTAAAGGTTACGGCTTAGGTGATGCGGGT GAAGGTAAAAACATCGCTCACAACGTGAAGAAGATGGGCGTTGAGTCTATCCGTTACTTCCGCGATCGTTTCAATATCCC GATCCCAGATGACCAGTTAGAAGATCTGCCTTTCTATCACCCAGGTCCAGATTCTGAAGAAGTGAAGTACATGATGAGCC GTCGTGAAGCGCTGCATGGTAGCGTGCCACAACGTCGTCAAAAGTTCACTGAAGAGATGGAAGTGCCGTCACTGAAGATT TTCGATTCGATTTTACAGGGCTCAAACGGCCGTGAAATTTCATCGACTATGGCATTCGTTCGCGTGCTGACAGCATTGCT GAAAGACAAGAAAATTGGCAAAAACATTGTGCCAATTATTCCTGACGAAGCCCGTACTTTCGGTATGGAAGGTCTGTTCC GTCAAGTGGGTATTTATGCTCACGAAGGCCAAAAATACGTACCGCAAGACTCTGACCAAGTGGCTTATTATCGTGAAGAT AAAACCGGTCAAGTATTGCAAGAAGGGATTAACGAACTCGGTGCTATGTCTTCATGGGTATCGGCAGCGACAAGCTACTC TGTCAACGATACACCTATGATCCCGTTCTACATCTACTACTCAATGTTCGGTTTCCAACGTATTGGCGACATGGCTTGGG CAGCGGGTGATATGCGTGCTCGTGGTTTCTTAGTCGGTGGTACTTCAGGTCGTACAACGCTTAACGGCGAAGGTTTACAG CATCAAGACGGTCACAGCCATGTATTGGCGAACACTATCCCTAACTGTATTTCTTACGATCCAACCTACGGTTACGAAAT TGCCGTTGTGGTACAAGATGGTATTCGTCGTATGTACGGCGAGAATCAAGAAGATATCTTCTACTACTTGACCACGATGA ACGAAAACTATGAGCAACCAGCCATGCCAGAAGGCGCGGAAGTGGGCATAGTTAAAGGTATCTATAAGTTAGAAACGGTT GCGGGCTCAGGTAAAGGCAAAGTTCAGTTAATGAGCTGTGGCACTATCCTCGAACAAACCCGTAAAGCGGCGCAAGCACT GGCGAAAGACTTCGGTATTACTGCCGACGTATTTAGCGTAACTAGCTTCAACGAATTGACTCGCGATGGTCAAGCCGCTG AACGTTGGAACATGCTGCACCCAACCGAAACGCCAAAACAAGCCTATATCAGCCAAGTGATTTCAAGTGATGCACCTGCA ATCGTCGCGACTGACTATATGAAGATTTACGGCGAACAGTTACGTGCTTATATTCCTACCGATTACAAAGTGTTAGGTAC TGACGGTTTCGGTCGTTCAGACAGCCGCGAGAATCTACGTCACCACTTCGAAGTGGACGCTAAGTTCATCGTTATTGCGG CACTGAAATCACTGGTTGATCGCAAAGAGCTGCCTGTCGATGTGTTAGCAAAAGCCATTAAAGAATATGGTATCGACGCT GACAAGATCAATCCACAGTACGCGTAA
Upstream 100 bases:
>100_bases TTTAAAGAGTGGCGCTTAAGTTCTGTAGTTTAGCTGCCTGCTAAATCGGAATATGCCGCAAACACCATTCATTATCATGT ATATAGAGAAGGACAGTGTC
Downstream 100 bases:
>100_bases GAGGCAATGAAAATGGCTGAATTAAAAGAAGTTTTTGTTCCTGATATCGGCGGCGATGAAGTGCAAGTGATCGAAATTTG TGTGGCTGTGGGTGATACCC
Product: pyruvate dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 888; Mature: 887
Protein sequence:
>888_residues MSEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYLNTIPAGQEPHMPGNQEMERR IRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEE QLANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALG AIGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDG EYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALEHAQKTKGRPTVILAKTVKGYGLGDAG EGKNIAHNVKKMGVESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRREALHGSVPQRRQKFTEEMEVPSLKI FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYRED KTGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQ HQDGHSHVLANTIPNCISYDPTYGYEIAVVVQDGIRRMYGENQEDIFYYLTTMNENYEQPAMPEGAEVGIVKGIYKLETV AGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAAERWNMLHPTETPKQAYISQVISSDAPA IVATDYMKIYGEQLRAYIPTDYKVLGTDGFGRSDSRENLRHHFEVDAKFIVIAALKSLVDRKELPVDVLAKAIKEYGIDA DKINPQYA
Sequences:
>Translated_888_residues MSEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYLNTIPAGQEPHMPGNQEMERR IRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEE QLANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALG AIGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDG EYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALEHAQKTKGRPTVILAKTVKGYGLGDAG EGKNIAHNVKKMGVESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRREALHGSVPQRRQKFTEEMEVPSLKI FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYRED KTGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQ HQDGHSHVLANTIPNCISYDPTYGYEIAVVVQDGIRRMYGENQEDIFYYLTTMNENYEQPAMPEGAEVGIVKGIYKLETV AGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAAERWNMLHPTETPKQAYISQVISSDAPA IVATDYMKIYGEQLRAYIPTDYKVLGTDGFGRSDSRENLRHHFEVDAKFIVIAALKSLVDRKELPVDVLAKAIKEYGIDA DKINPQYA >Mature_887_residues SEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYLNTIPAGQEPHMPGNQEMERRI RAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVCFNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEEQ LANFRQEVDGKGLSSYPHPKLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALGA IGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDPLLARDTSGKLLQLMEETVDGE YQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLNRGGHDPVKVYAALEHAQKTKGRPTVILAKTVKGYGLGDAGE GKNIAHNVKKMGVESIRYFRDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRREALHGSVPQRRQKFTEEMEVPSLKIF DSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYAHEGQKYVPQDSDQVAYYREDK TGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYIYYSMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQH QDGHSHVLANTIPNCISYDPTYGYEIAVVVQDGIRRMYGENQEDIFYYLTTMNENYEQPAMPEGAEVGIVKGIYKLETVA GSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAAERWNMLHPTETPKQAYISQVISSDAPAI VATDYMKIYGEQLRAYIPTDYKVLGTDGFGRSDSRENLRHHFEVDAKFIVIAALKSLVDRKELPVDVLAKAIKEYGIDAD KINPQYA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=890, Percent_Identity=66.6292134831461, Blast_Score=1281, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=227, Percent_Identity=29.5154185022026, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 99451; Mature: 99320
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYL CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH NTIPAGQEPHMPGNQEMERRIRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVC CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHH FNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEEQLANFRQEVDGKGLSSYPHP HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC KLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH AIGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDP HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH LLARDTSGKLLQLMEETVDGEYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLN HHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCEEECC RGGHDPVKVYAALEHAQKTKGRPTVILAKTVKGYGLGDAGEGKNIAHNVKKMGVESIRYF CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRREALHGSVPQRRQKFTEEMEVPSLKI HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCEEE HEGQKYVPQDSDQVAYYREDKTGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYIYY ECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCISYD HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHCCHHHCCC PTYGYEIAVVVQDGIRRMYGENQEDIFYYLTTMNENYEQPAMPEGAEVGIVKGIYKLETV CCCCCEEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH AGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAAERWNMLH CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCC PTETPKQAYISQVISSDAPAIVATDYMKIYGEQLRAYIPTDYKVLGTDGFGRSDSRENLR CCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHH HHFEVDAKFIVIAALKSLVDRKELPVDVLAKAIKEYGIDADKINPQYA HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SEDMLQDVDPLETQEWVDALQAVLEQEGPERAHFLLEKLIDKARRNGTHLPYNATTAYL CCHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH NTIPAGQEPHMPGNQEMERRIRAIIRWNALAMVLRGSKKDLELGGHISSFASSATIYDVC CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHH FNHFFRAPNEKDGGDLVYFQGHIAPGIYARSFLEGRLSEEQLANFRQEVDGKGLSSYPHP HHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC KLMPDYWQFPTVSMGLGPIQAIYQARFLKYLTDRGLKDCSAQTVYCFLGDGECDEPEALG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHH AIGLAAREELDNLVFIVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWEVVKVIWGRYWDP HHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCH LLARDTSGKLLQLMEETVDGEYQNCKAKGGAYTREHFFGKYPETAEMVANMSDDDIWRLN HHHCCCCHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHCCCCCCHHHHHHCCCCCCEEECC RGGHDPVKVYAALEHAQKTKGRPTVILAKTVKGYGLGDAGEGKNIAHNVKKMGVESIRYF CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH RDRFNIPIPDDQLEDLPFYHPGPDSEEVKYMMSRREALHGSVPQRRQKFTEEMEVPSLKI HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH FDSILQGSNGREISSTMAFVRVLTALLKDKKIGKNIVPIIPDEARTFGMEGLFRQVGIYA HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCEEE HEGQKYVPQDSDQVAYYREDKTGQVLQEGINELGAMSSWVSAATSYSVNDTPMIPFYIYY ECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SMFGFQRIGDMAWAAGDMRARGFLVGGTSGRTTLNGEGLQHQDGHSHVLANTIPNCISYD HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEHHHHCCHHHCCC PTYGYEIAVVVQDGIRRMYGENQEDIFYYLTTMNENYEQPAMPEGAEVGIVKGIYKLETV CCCCCEEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH AGSGKGKVQLMSCGTILEQTRKAAQALAKDFGITADVFSVTSFNELTRDGQAAERWNMLH CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHCCCCC PTETPKQAYISQVISSDAPAIVATDYMKIYGEQLRAYIPTDYKVLGTDGFGRSDSRENLR CCCCHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHH HHFEVDAKFIVIAALKSLVDRKELPVDVLAKAIKEYGIDADKINPQYA HHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]