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The map label for this gene is deoC

Identifier: 160876472

GI number: 160876472

Start: 3975191

End: 3975961

Strand: Reverse

Name: deoC

Synonym: Sbal195_3366

Alternate gene names: 160876472

Gene position: 3975961-3975191 (Counterclockwise)

Preceding gene: 160876473

Following gene: 160876471

Centisome position: 74.35

GC content: 48.25

Gene sequence:

>771_bases
ATGACTGATTTAAAAAAAGCAGCACAACGCGCCATCGAGTTAATGGACTTAACGACTTTGAATGATGACGACACAGATCA
AAAAGTGATCGACCTGTGCCACAAAGCGAAAACGGCTGCGGGCAATACTGCCGCTATCTGCATTTACCCACGTTTCATCC
CGATTGCACGTAAGACGCTAGATGAAATCGGTGCTGAAGATATCCAAATCGCCACTGTGACTAATTTCCCCCATGGCAAC
GATGACATCGCCATTGCCGTACTAGAAACCCGCGCTGCCGTTGCCTATGGTGCCGACGAAGTTGACGTGGTATTCCCATA
CCGTGCGCTGATGGAAGGCAATGAAACGATTGGTTTTGAATTAGTTAAAGCCTGTAAAGAAGCCTGTGGTGAAGTCTTGT
TAAAAGTCATCATCGAATCTGGCGTGTTAGCTGATCCTGCACTTATCCGCCGTGCATCTGAGCTTTCAATCGATGCGGGT
GCCGACTTTATTAAAACCTCTACGGGTAAAGTGCCTGTAAACGCAACACTCGAAGCGGCTGAGATCATGTTAACTGTGAT
CAGCGAAAAGAATACCCAAGTAGGCTTCAAGCCTGCCGGTGGTGTGCGTGATGCTGCCCAAGCGGCTGAGTTCCTAGGTG
TTGCAGAGCGTATTTTAGGTGCTGACTGGGTTTCTCCACGTACCTTTAGATTTGGTGCTTCAAGCCTATTAAACAGCTTG
CTGCACACACTAGAACTGGCTGATGCGCCTAAGCCGACTCAAGGCTATTAA

Upstream 100 bases:

>100_bases
AAGGCCCGGCCATAAAAATAATCAAAATAATGCCACCTCTTATGCGTTGCTTTTATGCGACTGATTTCTATTCATTTAAT
TTTCATTTTGGAGAGCTATT

Downstream 100 bases:

>100_bases
TCGCAAACTATCGCTGATTAATACTATCAGCGTATAGCGAGCCTAATTAAGTGTGACCTAAATCTATTTGGCAAACTCAA
AACTTCGATAGTATGAACTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAG
ADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
LHTLELADAPKPTQGY

Sequences:

>Translated_256_residues
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAG
ADFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
LHTLELADAPKPTQGY
>Mature_255_residues
TDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTLDEIGAEDIQIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFELVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGA
DFIKTSTGKVPVNATLEAAEIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSLL
HTLELADAPKPTQGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=250, Percent_Identity=36.8, Blast_Score=152, Evalue=3e-37,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=69.0677966101695, Blast_Score=320, Evalue=4e-89,
Organism=Caenorhabditis elegans, GI17533015, Length=249, Percent_Identity=38.5542168674699, Blast_Score=161, Evalue=4e-40,
Organism=Drosophila melanogaster, GI19922098, Length=256, Percent_Identity=35.15625, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_SHEB2 (B8E6P4)

Other databases:

- EMBL:   CP001252
- RefSeq:   YP_002357078.1
- ProteinModelPortal:   B8E6P4
- SMR:   B8E6P4
- GeneID:   7087593
- GenomeReviews:   CP001252_GR
- KEGG:   sbp:Sbal223_1140
- HOGENOM:   HBG636421
- OMA:   ELVQQCK
- ProtClustDB:   PRK05283
- GO:   GO:0005737
- HAMAP:   MF_00592
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 27346; Mature: 27214

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: ACT_SITE 165-165 ACT_SITE 197-197

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTL
CCHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHH
DEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHH
EIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHH
LHTLELADAPKPTQGY
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TDLKKAAQRAIELMDLTTLNDDDTDQKVIDLCHKAKTAAGNTAAICIYPRFIPIARKTL
CHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHH
DEIGAEDIQIATVTNFPHGNDDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETIGFE
HHCCCCCEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCEEEEECHHHHHCCCCCHHHH
LVKACKEACGEVLLKVIIESGVLADPALIRRASELSIDAGADFIKTSTGKVPVNATLEAA
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCHHHHH
EIMLTVISEKNTQVGFKPAGGVRDAAQAAEFLGVAERILGADWVSPRTFRFGASSLLNSL
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHH
LHTLELADAPKPTQGY
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA