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The map label for this gene is ompK [H]

Identifier: 160876473

GI number: 160876473

Start: 3976383

End: 3977252

Strand: Reverse

Name: ompK [H]

Synonym: Sbal195_3367

Alternate gene names: 160876473

Gene position: 3977252-3976383 (Counterclockwise)

Preceding gene: 160876474

Following gene: 160876472

Centisome position: 74.38

GC content: 43.68

Gene sequence:

>870_bases
ATGAAAAACGTTAAAACTTTAGCTTTAGCCGCTACTGCTGTAGCTGCAATCTCTGGCAACGCATTTGCCGCTGATCGTAC
AGATCTTCACGGTACTGATTACAAGTGGATGCAGTTCAACGCTATGTACTCTATCGGTGAAAAACCAGAGAACCCAGCGG
CTGGCGATCAACACAACTACTTAGAAATGGAATTCGGCGGTCGTTCTGGCGTATTCGATCTATACGGTTATGTTGACGTA
TTCAACTTGGCAAACGAAACATCAAGCAATGGTGACAAGAATCCAGGTACAGGTAAAAGTAAGCTGTTTATGAAGTTTGC
GCCACGTGTATCTATCGATGCGCTTACTGGTAAAGACTTGTCTTTTGGACCAATCCAAGAAGTTTACTTCTCTACTCTGT
TCAACTGGGATGGATTAGTTAACGATGGTGATGGTTCTGGCGTTAACTCTACTTTTTGGGGTGTTGGTGCTGACGTAAAC
GTGCCTTGGTTAGGCAAAACAGGCATGAACCTGTACGGTTACTATGACATGAACGCTAAAGAGTGGAACGGCTACCAGTT
CTCTGCTAACTGGTTCAAACCTTTCTACTTCTTCGATAACAAGAGCTTCCTGTCATTCCAAGGTTACATCGATTATCAAT
TTGGTGCTGACGAAGCATATTGGCCTGCTGTTGAGAATGGTCCTTTAGTTAAGGGCAAATCAACTAACGGCGGTAACGTA
TTCTTCGGTCTATACTGGCATTCAGATCGTTATGCTCTGGGTTATGGCTTGAAAGGCTTCAAAGATGTTTACTTGCTAAC
TGATGATGGTGCTACTGGCCTAGAATCAACAGGTTGGTCACACTACCTGTCAGCTACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
ACGCTAGATTATTGAGATTTTTTTTAATCTAGGTAGAATGCGAGCGCCACAAAAAGAACGCTACCCTCGATGGTAGCAAA
CAAGATAAATGGGGTTGATG

Downstream 100 bases:

>100_bases
TCTCTTGTAATACTAGTTGCTTGTTGGAGCCGCATTATGCGGCTCCATCTTTGTTTTACCATGAGTCTTTATCTAAGCCT
ATTAGGCTAACAAGTGGGTT

Product: nucleoside-specific channel-forming protein Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNYLEMEFGGRSGVFDLYGYVDV
FNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVN
VPWLGKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNV
FFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF

Sequences:

>Translated_289_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNYLEMEFGGRSGVFDLYGYVDV
FNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVN
VPWLGKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNV
FFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
>Mature_289_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNYLEMEFGGRSGVFDLYGYVDV
FNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVN
VPWLGKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNV
FFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=249, Percent_Identity=31.7269076305221, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 32061; Mature: 32061

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNY
CCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGVFDLYGYVDVFNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
SFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAK
CCCCHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC
EWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNV
CCCCEEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEE
FFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
EEEEEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGTDYKWMQFNAMYSIGEKPENPAAGDQHNY
CCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGVFDLYGYVDVFNLANETSSNGDKNPGTGKSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
SFGPIQEVYFSTLFNWDGLVNDGDGSGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAK
CCCCHHHHHHHHHHCCCCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCC
EWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEAYWPAVENGPLVKGKSTNGGNV
CCCCEEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEECCCCCCCEE
FFGLYWHSDRYALGYGLKGFKDVYLLTDDGATGLESTGWSHYLSATYKF
EEEEEEECCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]