| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is 160876230
Identifier: 160876230
GI number: 160876230
Start: 3687171
End: 3689651
Strand: Reverse
Name: 160876230
Synonym: Sbal195_3124
Alternate gene names: NA
Gene position: 3689651-3687171 (Counterclockwise)
Preceding gene: 160876231
Following gene: 160876220
Centisome position: 69.0
GC content: 38.94
Gene sequence:
>2481_bases ATGACCCCCTCTGAAGGAAAATTAGATTTCTCAACTAATGCTTTTGGTGAGAGATATTTATATCCTGTCAATCAAATCAG TTTTGACCGGTACGATTCACACAGTGTTTTCAAGGCACACTATCATGAAGCATTATGGGGCGATGATACATTTAATGTCA TTATTGGGACTGACTCTGGATTGCTGGTTGATTATGTTAGGCAACACCGTAAGCAAGATAATTCAGTGTATATATTTGTT GAATTACAGTCTTTGGTGGGAGCTGTTAACACAAACTGCTTTATTGAAGAAGATTCCAATATTTACATCTATGGATCCGA TGAGTGGGAATCGGCGGTAAAGCGTTCGGAAATAGCGCAATTCATCTATAAAAATAAATTACGTTTTTTTGACTCATTAG GCGCTAGATATGAATACTTGGATGATTATCATGCGCTAAAGTTTAAAGTGCATGCCAGTTTAGAGCAGCTTTCCTATTTA AATCGCGTTACGCTAGGTAGTGAAAACTTTATCGTGCGCCAGCTACAAAATATCTCTGAAAATTATCTTTCCGCGATGCC GCTCAAAGATGTATTTTCAGGGTGCACGGCCATTATTCTAGCTGGTGGTCCATCATTAGATGAGGTACTTCCTTGGGTCA TTGAGTATCGCGAACGACTGGTCGTTATCGCGGTATCAAGGATTGCCAAACGCCTACGAGAAGTTGATTTAATCCCTGAT GTGTTTGTATCAGTCGATCCTTTCGATGATAGTTTTGATGTCAGCAAGGAGATGTTGGAGTTTCCGCCTTCCGTCGTATT TGTAAATTCATATCATGTTGTTTCAAAGTTATTAGCGCAGTGGCGGGGGCCAAATCTTTATCTTGGTTTACGTTTCCCAT GGAAAACACCCAATAATGGTGAAAACTTTTATTCAGCAGGGCCAACAGTGACCAATTCTGCTTTGTCATTTACGTTAGGA ATTGGTTGCTCTAAAATTTTATTTGCGGGTGTGGATCTGTGCTTTTCTAAGGAAGGTTATACACATGCAAAAGGCAGTAT TGAAACAGCTCAAGGTCCTTTACTTACTGCTGATGGATTGTGGGTCGAAACCAATGCAAATGAGATGGCTGAAACATCAT TTCCATTGGCCTCTGCCCGTGAGCAATTTGAAATTATGATTGCTGAACAGCCAGATGATAAATTCGAAATTATCAATCTT GCGTTGAATGCAGCCAAAATAAAGGGTGTGAATTATCAAAATATCAAGGATGTTGAAATTGTTGGTTTTCCTGATAGTGC CAAGCAAAAAATGCATGATTACTGCCATAGTTTTACCGAGGAAAATAGATATCAAGATAGTAATATGGTCTTTAAAGAGC TGTCTAAGGTTCAAAATGATCTGAAGAAAATAATATTACTCGCCAATGAAGGAATATTGGCTAATAAGAAGTTGTATGGC AGTAAAGATCAACATCAAAAGGATCGCATTACAGTTAAATTAAATAAGATCCAGAGCAAGCTAGATAAAAATTTTGCGTA TCTTGCACGGCTGCTTAAAACCTATGGGCTTAGTTATTTTGTGGAGTATATGGATCCTAGTTCAATTGACCATTGGGATG ATGCTAAGTTAGAAAAAAGCGGTGACCTTTATTATCAAGCGTATAAGAAAAGTGCAAAAAAACTGTTAAAGCTAATCGAT GCGAGTATTGATCGTGTGCTATCTCGTAAAGAAGAAATGAAAATTCATCCAGATTTTGAATTGATTTTTTCCGCTTGGAT ACGAGATAAACAGCTTGGGCGAGCTTATATTTGGGCACAAAAACATCCTTTAGCAGAACAGTCCCTTGCTACTCAACAAA GCTTTGAGCGGGTATTTTCCGAGTATCATGCCGTGATTAATTCAAATGACACCGAGCATGCTCAATTTATCGCAAAAAGA GCCAGTGTTGATGGGGTTGAGCATAAGGCTACGCAGCTTTTCGCAAAACGAGATTTAAATGGGTTGAAGAAGCTTGCACT TAGTTTATCGTTACAGCCTCAGAATGATGTGGCTAAAGACTCTTTAGCTCATCTGTTATCTGGTTATATTTATGTGCTGT TAGATGATAATAATGAAGCACTAGCTCATTTTCAGCAAACTAATGTCGATAGTCATCGTATGTATGCGCTTAATCATATT GTGGGAATAGAGCTTGGGGAAAAGCGCTTCGCTGAGGCCATCGTCGGTTTAAGAGAGTTATGTGCATTCTCTCCGAGATA CTTTATTAAGTTAGCGCATTTGCAGTATCTAACCGATGAGCCAATGGCTGCTATCGATGCTTATAACCAGTATTTGACTC TTTTCGGAGATGATACCCAAGCGTGGATGGCGTTAGCGAAAATTTTCTTTGAGCTAGGTGCGATAGAGTCTGCACAAATT GCATGTGATTATGTATTGGATGTTGAGCCGCAAAATAAGCTAGCAGCAACAATGCTACTGCAGATTGGAAAATTAGCTTA G
Upstream 100 bases:
>100_bases AAGAAGACTCCATTGATATTGATACCGAGATTGATTTTCAATTTGGTGAATTTTTGGTATCTAAAAAATAGTTAACCCTC CGTATTTAAAGGATAATATA
Downstream 100 bases:
>100_bases AAACAAGGTGAGCGTTGGTCAAAGTCTAATATGACTTTTGATAATCGTTCCATGTCCTGAACTGTATAGCGAGTATCGAG TGGAATTGATAGCCAATTAA
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MTPSEGKLDFSTNAFGERYLYPVNQISFDRYDSHSVFKAHYHEALWGDDTFNVIIGTDSGLLVDYVRQHRKQDNSVYIFV ELQSLVGAVNTNCFIEEDSNIYIYGSDEWESAVKRSEIAQFIYKNKLRFFDSLGARYEYLDDYHALKFKVHASLEQLSYL NRVTLGSENFIVRQLQNISENYLSAMPLKDVFSGCTAIILAGGPSLDEVLPWVIEYRERLVVIAVSRIAKRLREVDLIPD VFVSVDPFDDSFDVSKEMLEFPPSVVFVNSYHVVSKLLAQWRGPNLYLGLRFPWKTPNNGENFYSAGPTVTNSALSFTLG IGCSKILFAGVDLCFSKEGYTHAKGSIETAQGPLLTADGLWVETNANEMAETSFPLASAREQFEIMIAEQPDDKFEIINL ALNAAKIKGVNYQNIKDVEIVGFPDSAKQKMHDYCHSFTEENRYQDSNMVFKELSKVQNDLKKIILLANEGILANKKLYG SKDQHQKDRITVKLNKIQSKLDKNFAYLARLLKTYGLSYFVEYMDPSSIDHWDDAKLEKSGDLYYQAYKKSAKKLLKLID ASIDRVLSRKEEMKIHPDFELIFSAWIRDKQLGRAYIWAQKHPLAEQSLATQQSFERVFSEYHAVINSNDTEHAQFIAKR ASVDGVEHKATQLFAKRDLNGLKKLALSLSLQPQNDVAKDSLAHLLSGYIYVLLDDNNEALAHFQQTNVDSHRMYALNHI VGIELGEKRFAEAIVGLRELCAFSPRYFIKLAHLQYLTDEPMAAIDAYNQYLTLFGDDTQAWMALAKIFFELGAIESAQI ACDYVLDVEPQNKLAATMLLQIGKLA
Sequences:
>Translated_826_residues MTPSEGKLDFSTNAFGERYLYPVNQISFDRYDSHSVFKAHYHEALWGDDTFNVIIGTDSGLLVDYVRQHRKQDNSVYIFV ELQSLVGAVNTNCFIEEDSNIYIYGSDEWESAVKRSEIAQFIYKNKLRFFDSLGARYEYLDDYHALKFKVHASLEQLSYL NRVTLGSENFIVRQLQNISENYLSAMPLKDVFSGCTAIILAGGPSLDEVLPWVIEYRERLVVIAVSRIAKRLREVDLIPD VFVSVDPFDDSFDVSKEMLEFPPSVVFVNSYHVVSKLLAQWRGPNLYLGLRFPWKTPNNGENFYSAGPTVTNSALSFTLG IGCSKILFAGVDLCFSKEGYTHAKGSIETAQGPLLTADGLWVETNANEMAETSFPLASAREQFEIMIAEQPDDKFEIINL ALNAAKIKGVNYQNIKDVEIVGFPDSAKQKMHDYCHSFTEENRYQDSNMVFKELSKVQNDLKKIILLANEGILANKKLYG SKDQHQKDRITVKLNKIQSKLDKNFAYLARLLKTYGLSYFVEYMDPSSIDHWDDAKLEKSGDLYYQAYKKSAKKLLKLID ASIDRVLSRKEEMKIHPDFELIFSAWIRDKQLGRAYIWAQKHPLAEQSLATQQSFERVFSEYHAVINSNDTEHAQFIAKR ASVDGVEHKATQLFAKRDLNGLKKLALSLSLQPQNDVAKDSLAHLLSGYIYVLLDDNNEALAHFQQTNVDSHRMYALNHI VGIELGEKRFAEAIVGLRELCAFSPRYFIKLAHLQYLTDEPMAAIDAYNQYLTLFGDDTQAWMALAKIFFELGAIESAQI ACDYVLDVEPQNKLAATMLLQIGKLA >Mature_825_residues TPSEGKLDFSTNAFGERYLYPVNQISFDRYDSHSVFKAHYHEALWGDDTFNVIIGTDSGLLVDYVRQHRKQDNSVYIFVE LQSLVGAVNTNCFIEEDSNIYIYGSDEWESAVKRSEIAQFIYKNKLRFFDSLGARYEYLDDYHALKFKVHASLEQLSYLN RVTLGSENFIVRQLQNISENYLSAMPLKDVFSGCTAIILAGGPSLDEVLPWVIEYRERLVVIAVSRIAKRLREVDLIPDV FVSVDPFDDSFDVSKEMLEFPPSVVFVNSYHVVSKLLAQWRGPNLYLGLRFPWKTPNNGENFYSAGPTVTNSALSFTLGI GCSKILFAGVDLCFSKEGYTHAKGSIETAQGPLLTADGLWVETNANEMAETSFPLASAREQFEIMIAEQPDDKFEIINLA LNAAKIKGVNYQNIKDVEIVGFPDSAKQKMHDYCHSFTEENRYQDSNMVFKELSKVQNDLKKIILLANEGILANKKLYGS KDQHQKDRITVKLNKIQSKLDKNFAYLARLLKTYGLSYFVEYMDPSSIDHWDDAKLEKSGDLYYQAYKKSAKKLLKLIDA SIDRVLSRKEEMKIHPDFELIFSAWIRDKQLGRAYIWAQKHPLAEQSLATQQSFERVFSEYHAVINSNDTEHAQFIAKRA SVDGVEHKATQLFAKRDLNGLKKLALSLSLQPQNDVAKDSLAHLLSGYIYVLLDDNNEALAHFQQTNVDSHRMYALNHIV GIELGEKRFAEAIVGLRELCAFSPRYFIKLAHLQYLTDEPMAAIDAYNQYLTLFGDDTQAWMALAKIFFELGAIESAQIA CDYVLDVEPQNKLAATMLLQIGKLA
Specific function: Unknown
COG id: COG2604
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93952; Mature: 93820
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSEGKLDFSTNAFGERYLYPVNQISFDRYDSHSVFKAHYHEALWGDDTFNVIIGTDSG CCCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC LLVDYVRQHRKQDNSVYIFVELQSLVGAVNTNCFIEEDSNIYIYGSDEWESAVKRSEIAQ HHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHHHHHH FIYKNKLRFFDSLGARYEYLDDYHALKFKVHASLEQLSYLNRVTLGSENFIVRQLQNISE HHHHHHHHHHHHHCCHHHHHCCHHEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH NYLSAMPLKDVFSGCTAIILAGGPSLDEVLPWVIEYRERLVVIAVSRIAKRLREVDLIPD HHHHCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VFVSVDPFDDSFDVSKEMLEFPPSVVFVNSYHVVSKLLAQWRGPNLYLGLRFPWKTPNNG HEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCCCC ENFYSAGPTVTNSALSFTLGIGCSKILFAGVDLCFSKEGYTHAKGSIETAQGPLLTADGL CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCE WVETNANEMAETSFPLASAREQFEIMIAEQPDDKFEIINLALNAAKIKGVNYQNIKDVEI EEECCCCHHHHHCCCHHHCCCCEEEEEECCCCCCEEHHHHEEEHHHCCCCCCCCCCCEEE VGFPDSAKQKMHDYCHSFTEENRYQDSNMVFKELSKVQNDLKKIILLANEGILANKKLYG EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCC SKDQHQKDRITVKLNKIQSKLDKNFAYLARLLKTYGLSYFVEYMDPSSIDHWDDAKLEKS CCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC GDLYYQAYKKSAKKLLKLIDASIDRVLSRKEEMKIHPDFELIFSAWIRDKQLGRAYIWAQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC KHPLAEQSLATQQSFERVFSEYHAVINSNDTEHAQFIAKRASVDGVEHKATQLFAKRDLN CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLKKLALSLSLQPQNDVAKDSLAHLLSGYIYVLLDDNNEALAHFQQTNVDSHRMYALNHI HHHHHHHHEECCCCCCHHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHE VGIELGEKRFAEAIVGLRELCAFSPRYFIKLAHLQYLTDEPMAAIDAYNQYLTLFGDDTQ EEEECCHHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHCCCCHHHHHHHHCEEEEECCCHH AWMALAKIFFELGAIESAQIACDYVLDVEPQNKLAATMLLQIGKLA HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TPSEGKLDFSTNAFGERYLYPVNQISFDRYDSHSVFKAHYHEALWGDDTFNVIIGTDSG CCCCCCEECCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCC LLVDYVRQHRKQDNSVYIFVELQSLVGAVNTNCFIEEDSNIYIYGSDEWESAVKRSEIAQ HHHHHHHHHCCCCCCEEEEEEHHHHHHHHCCCEEEEECCEEEEEECCHHHHHHHHHHHHH FIYKNKLRFFDSLGARYEYLDDYHALKFKVHASLEQLSYLNRVTLGSENFIVRQLQNISE HHHHHHHHHHHHHCCHHHHHCCHHEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH NYLSAMPLKDVFSGCTAIILAGGPSLDEVLPWVIEYRERLVVIAVSRIAKRLREVDLIPD HHHHCCCHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH VFVSVDPFDDSFDVSKEMLEFPPSVVFVNSYHVVSKLLAQWRGPNLYLGLRFPWKTPNNG HEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCCEEEEEEECCCCCCCC ENFYSAGPTVTNSALSFTLGIGCSKILFAGVDLCFSKEGYTHAKGSIETAQGPLLTADGL CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCE WVETNANEMAETSFPLASAREQFEIMIAEQPDDKFEIINLALNAAKIKGVNYQNIKDVEI EEECCCCHHHHHCCCHHHCCCCEEEEEECCCCCCEEHHHHEEEHHHCCCCCCCCCCCEEE VGFPDSAKQKMHDYCHSFTEENRYQDSNMVFKELSKVQNDLKKIILLANEGILANKKLYG EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCEECCCCCC SKDQHQKDRITVKLNKIQSKLDKNFAYLARLLKTYGLSYFVEYMDPSSIDHWDDAKLEKS CCCCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC GDLYYQAYKKSAKKLLKLIDASIDRVLSRKEEMKIHPDFELIFSAWIRDKQLGRAYIWAQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEC KHPLAEQSLATQQSFERVFSEYHAVINSNDTEHAQFIAKRASVDGVEHKATQLFAKRDLN CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH GLKKLALSLSLQPQNDVAKDSLAHLLSGYIYVLLDDNNEALAHFQQTNVDSHRMYALNHI HHHHHHHHEECCCCCCHHHHHHHHHHCCEEEEEEECCCHHHHHHHHCCCCCHHHHHHHHE VGIELGEKRFAEAIVGLRELCAFSPRYFIKLAHLQYLTDEPMAAIDAYNQYLTLFGDDTQ EEEECCHHHHHHHHHHHHHHHHCCCHHHHEEHHHHHHCCCCHHHHHHHHCEEEEECCCHH AWMALAKIFFELGAIESAQIACDYVLDVEPQNKLAATMLLQIGKLA HHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA