| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159900923
Identifier: 159900923
GI number: 159900923
Start: 5632092
End: 5634038
Strand: Direct
Name: 159900923
Synonym: Haur_4410
Alternate gene names: NA
Gene position: 5632092-5634038 (Clockwise)
Preceding gene: 159900914
Following gene: 159900924
Centisome position: 88.74
GC content: 44.48
Gene sequence:
>1947_bases ATGCAACGTCGATCGAACTATTGGTTTTTGCTCATAAGCTTCGTTTTAGCTGCTTGTGGTCAACCAGATAGCTTGCTTTC AACAAGTCCAACAGTAACAATGGCCGACCAAGCCAACCCAACCAGCACGCCGATCAACGGTGGTCAGAGTAGCGATCTTG CCATAATCGAGCAATTGCAACGACCAGCCCAAAGCCAACCCTACGAGTTTGCACCAAACCCAATGAGTGCTAACATTAAT GATTGGTTGAGGATACTTATGCCGAAGGTTATGCTCGATCAGCTTATGACACTTGATCTCGATTCAAACAGTAATCCCAA CGATTTACCAATTAAAGCAATTGACGATTATTTCACTGATACGCCAATCGATAAGCTGATTGAGCATTATCGAACCAGCT TGGCCGCCACAAATTGGATTGCTCAGCCGATTCAGCACATAAATCCCCAAGATACAACCTTGATATTTGAGCATGAGCAA ACCCAGCTTTACATTTTTATCTTTACGCCGATGAATACTGATCAATTGTTTGTTTCGATTAAATTGCTGCAAACGAATCA TTCACGGCCAAACCTCGAACTGCCGTTAGTAAATACTTCAGATATCTTTACAACGCACGATGTGCGCTTCCCATCAGATA CCACCATCAATAATGAACTGTTGAATGACCCAGCCAGGGGCGAATTGCTTAAACGCGATCTGCTGATGCCAATTCGCCAA CTACAAAGCTTTTGGCCGGGCGAGATCACGCTCGAAGCGAGCCTCGTAGCTGAGACTTTCGGTTCTCAGCAGATTACCTA CGATTTAGCTAAAGCTATATCTGAACTTGGTGGCTGGCAAGCAAGCAATACGTTATTGGGAAGTGATAGTTATATCGGCC CTCCATTGTTGCGTTTTGTTGATAATACAATTCAAGTGCTGCTAATGAACCAGCTCAGCGAGCACGAATATCTGGCCCAA TCAAGCCCAAACGATTGGCTGTTGGGGATGCATCTGTTAACTCTGCGATCCTCCGAGCAGCCAAATTTCACGTTAGACCC CAGCTTTTTCAGCCCAATTGAAGCATTAGAAATCCCAACCCAACCAGATCAGCAGGATTATCAGCTTGGTACAGATCGAT TAGTTGATAGCTTGCTCTATGGCTGGCAGCATAATCAGATCACCAAAACCAAGCTTCAGGCCTACATCAACACCAACTAT CCACCTGAATCCGCATGTAGCCCAAGCACAACCAACCCAAACAGCAACATTCGCTATAGTGTTTTCAGCAGCGACAGCAA CCCAAGCCAAATATCAGCAACATATAAACAAACATTAACTGAACCAAACAACTGGAATAACCTCGAAGACGATACAACCT TTGCATTTTATGGAGTCAGAACTGAGCAAGGCTATCATGGTGGTACGCTTAGTTTGATTGAACGAAGTCGCTACAACCTT CAGTTAAGCGGCAGTATTGGGATTATCAGCGAATCGACCCCAAATAGTGTTCCACAGATTAGCTTTCGAGGGCAAGAATA TCCTTCTTATATCGGAGTAGCATGGCTCGTTGAGCCAATTACCCATAGCTTGCCATTACTACCCGATGCGATGGTGTTTA ACTCTGTCTCTCACGAACGCTTTAATGGCTATGCTTACGGCTGGCTTAGAAGTTTGAATTACCAACGCTCCAGTAACGAT TGCAAGGAAATCACCTATATTGATGGCGTACAAGCCTTGGTCATCGATTCAAGTGACTTAACGCTTGCACCCAATTTCTA CGACCCAATCTTACTCGGCCAAGGCTGGCAGAAAATTGTGATGAGTGATCAGCATCATCGCTACATTAAAACAGAGCAAG ATGGTAAAGTCATCAATACAATCAACATTCGCTGGCAACTTGGCAGCCGTATCACAGGTGACATAATCCAAGTCGTGATG ATCGATTCAAGCATTACTTATCGCTAA
Upstream 100 bases:
>100_bases TATTGGCAGTAAAAACCAATTGTTTGGCCCAATTATCCAGCTAGAGTAAGCAGTGAGATCAGCGATTTAAGTTGGTGGAT TTTGAACTGGAGAATGATGT
Downstream 100 bases:
>100_bases ATTGCCCCAATGCTTGCAAACTGCGCTATGGCGACAAACCCATGGCGCAGTTGCTCTTTTTAGCCCACAACGCTGTATTG AGTCTAATCTCTACTCCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 648; Mature: 648
Protein sequence:
>648_residues MQRRSNYWFLLISFVLAACGQPDSLLSTSPTVTMADQANPTSTPINGGQSSDLAIIEQLQRPAQSQPYEFAPNPMSANIN DWLRILMPKVMLDQLMTLDLDSNSNPNDLPIKAIDDYFTDTPIDKLIEHYRTSLAATNWIAQPIQHINPQDTTLIFEHEQ TQLYIFIFTPMNTDQLFVSIKLLQTNHSRPNLELPLVNTSDIFTTHDVRFPSDTTINNELLNDPARGELLKRDLLMPIRQ LQSFWPGEITLEASLVAETFGSQQITYDLAKAISELGGWQASNTLLGSDSYIGPPLLRFVDNTIQVLLMNQLSEHEYLAQ SSPNDWLLGMHLLTLRSSEQPNFTLDPSFFSPIEALEIPTQPDQQDYQLGTDRLVDSLLYGWQHNQITKTKLQAYINTNY PPESACSPSTTNPNSNIRYSVFSSDSNPSQISATYKQTLTEPNNWNNLEDDTTFAFYGVRTEQGYHGGTLSLIERSRYNL QLSGSIGIISESTPNSVPQISFRGQEYPSYIGVAWLVEPITHSLPLLPDAMVFNSVSHERFNGYAYGWLRSLNYQRSSND CKEITYIDGVQALVIDSSDLTLAPNFYDPILLGQGWQKIVMSDQHHRYIKTEQDGKVINTINIRWQLGSRITGDIIQVVM IDSSITYR
Sequences:
>Translated_648_residues MQRRSNYWFLLISFVLAACGQPDSLLSTSPTVTMADQANPTSTPINGGQSSDLAIIEQLQRPAQSQPYEFAPNPMSANIN DWLRILMPKVMLDQLMTLDLDSNSNPNDLPIKAIDDYFTDTPIDKLIEHYRTSLAATNWIAQPIQHINPQDTTLIFEHEQ TQLYIFIFTPMNTDQLFVSIKLLQTNHSRPNLELPLVNTSDIFTTHDVRFPSDTTINNELLNDPARGELLKRDLLMPIRQ LQSFWPGEITLEASLVAETFGSQQITYDLAKAISELGGWQASNTLLGSDSYIGPPLLRFVDNTIQVLLMNQLSEHEYLAQ SSPNDWLLGMHLLTLRSSEQPNFTLDPSFFSPIEALEIPTQPDQQDYQLGTDRLVDSLLYGWQHNQITKTKLQAYINTNY PPESACSPSTTNPNSNIRYSVFSSDSNPSQISATYKQTLTEPNNWNNLEDDTTFAFYGVRTEQGYHGGTLSLIERSRYNL QLSGSIGIISESTPNSVPQISFRGQEYPSYIGVAWLVEPITHSLPLLPDAMVFNSVSHERFNGYAYGWLRSLNYQRSSND CKEITYIDGVQALVIDSSDLTLAPNFYDPILLGQGWQKIVMSDQHHRYIKTEQDGKVINTINIRWQLGSRITGDIIQVVM IDSSITYR >Mature_648_residues MQRRSNYWFLLISFVLAACGQPDSLLSTSPTVTMADQANPTSTPINGGQSSDLAIIEQLQRPAQSQPYEFAPNPMSANIN DWLRILMPKVMLDQLMTLDLDSNSNPNDLPIKAIDDYFTDTPIDKLIEHYRTSLAATNWIAQPIQHINPQDTTLIFEHEQ TQLYIFIFTPMNTDQLFVSIKLLQTNHSRPNLELPLVNTSDIFTTHDVRFPSDTTINNELLNDPARGELLKRDLLMPIRQ LQSFWPGEITLEASLVAETFGSQQITYDLAKAISELGGWQASNTLLGSDSYIGPPLLRFVDNTIQVLLMNQLSEHEYLAQ SSPNDWLLGMHLLTLRSSEQPNFTLDPSFFSPIEALEIPTQPDQQDYQLGTDRLVDSLLYGWQHNQITKTKLQAYINTNY PPESACSPSTTNPNSNIRYSVFSSDSNPSQISATYKQTLTEPNNWNNLEDDTTFAFYGVRTEQGYHGGTLSLIERSRYNL QLSGSIGIISESTPNSVPQISFRGQEYPSYIGVAWLVEPITHSLPLLPDAMVFNSVSHERFNGYAYGWLRSLNYQRSSND CKEITYIDGVQALVIDSSDLTLAPNFYDPILLGQGWQKIVMSDQHHRYIKTEQDGKVINTINIRWQLGSRITGDIIQVVM IDSSITYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73242; Mature: 73242
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRRSNYWFLLISFVLAACGQPDSLLSTSPTVTMADQANPTSTPINGGQSSDLAIIEQLQ CCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH RPAQSQPYEFAPNPMSANINDWLRILMPKVMLDQLMTLDLDSNSNPNDLPIKAIDDYFTD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHHCC TPIDKLIEHYRTSLAATNWIAQPIQHINPQDTTLIFEHEQTQLYIFIFTPMNTDQLFVSI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEE KLLQTNHSRPNLELPLVNTSDIFTTHDVRFPSDTTINNELLNDPARGELLKRDLLMPIRQ EEEECCCCCCCEEEEEECCCCCEEECCEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH LQSFWPGEITLEASLVAETFGSQQITYDLAKAISELGGWQASNTLLGSDSYIGPPLLRFV HHHCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHH DNTIQVLLMNQLSEHEYLAQSSPNDWLLGMHLLTLRSSEQPNFTLDPSFFSPIEALEIPT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEECCHHCCCHHHHCCCC QPDQQDYQLGTDRLVDSLLYGWQHNQITKTKLQAYINTNYPPESACSPSTTNPNSNIRYS CCCCCHHHCCHHHHHHHHHHCCCCCCEEHEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE VFSSDSNPSQISATYKQTLTEPNNWNNLEDDTTFAFYGVRTEQGYHGGTLSLIERSRYNL EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHEEECCCCCE QLSGSIGIISESTPNSVPQISFRGQEYPSYIGVAWLVEPITHSLPLLPDAMVFNSVSHER EECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHH FNGYAYGWLRSLNYQRSSNDCKEITYIDGVQALVIDSSDLTLAPNFYDPILLGQGWQKIV CCCEEEEHHHHCCCCCCCCCCCEEEEECCEEEEEEECCCCEECCCCCCCEEECCCHHHHH MSDQHHRYIKTEQDGKVINTINIRWQLGSRITGDIIQVVMIDSSITYR CCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCC >Mature Secondary Structure MQRRSNYWFLLISFVLAACGQPDSLLSTSPTVTMADQANPTSTPINGGQSSDLAIIEQLQ CCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH RPAQSQPYEFAPNPMSANINDWLRILMPKVMLDQLMTLDLDSNSNPNDLPIKAIDDYFTD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEHHHHHCC TPIDKLIEHYRTSLAATNWIAQPIQHINPQDTTLIFEHEQTQLYIFIFTPMNTDQLFVSI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEE KLLQTNHSRPNLELPLVNTSDIFTTHDVRFPSDTTINNELLNDPARGELLKRDLLMPIRQ EEEECCCCCCCEEEEEECCCCCEEECCEECCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH LQSFWPGEITLEASLVAETFGSQQITYDLAKAISELGGWQASNTLLGSDSYIGPPLLRFV HHHCCCCCEEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHH DNTIQVLLMNQLSEHEYLAQSSPNDWLLGMHLLTLRSSEQPNFTLDPSFFSPIEALEIPT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCEEECCHHCCCHHHHCCCC QPDQQDYQLGTDRLVDSLLYGWQHNQITKTKLQAYINTNYPPESACSPSTTNPNSNIRYS CCCCCHHHCCHHHHHHHHHHCCCCCCEEHEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE VFSSDSNPSQISATYKQTLTEPNNWNNLEDDTTFAFYGVRTEQGYHGGTLSLIERSRYNL EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHEEECCCCCE QLSGSIGIISESTPNSVPQISFRGQEYPSYIGVAWLVEPITHSLPLLPDAMVFNSVSHER EECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHH FNGYAYGWLRSLNYQRSSNDCKEITYIDGVQALVIDSSDLTLAPNFYDPILLGQGWQKIV CCCEEEEHHHHCCCCCCCCCCCEEEEECCEEEEEEECCCCEECCCCCCCEEECCCHHHHH MSDQHHRYIKTEQDGKVINTINIRWQLGSRITGDIIQVVMIDSSITYR CCCCCCCEEEECCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA