BacMap

Definition	Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome.
Accession	NC_009972
Length	6,346,587

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The map label for this gene is ycdF [H]

Identifier: 159900495

GI number: 159900495

Start: 5081069

End: 5081908

Strand: Reverse

Name: ycdF [H]

Synonym: Haur_3982

Alternate gene names: 159900495

Gene position: 5081908-5081069 (Counterclockwise)

Preceding gene: 159900496

Following gene: 159900494

Centisome position: 80.07

GC content: 52.74

Gene sequence:

>840_bases
ATGAAATTGCTCGATAAAGTAATTGTCATTACTGGTGGCAGCCGTGGCTTGGGCTTGGCGATGGCCGAAGCAATGCTCAG
CCAAGGAGCCAAAGTTGTGATCGCTGGCCGCGATCAAGCTAGCCTTGAACAAGCCCTTGCTCAACTCAAACGCCAATCGA
GCCATGTGCTGGCAACAACTTGCGATGTTGGCGATTTGGCAGCAATCGAAGCCTTGCGCGATCAAACTATCGCCCAGTTT
GGCAAACTCGATGTCTGGGTCAACAATGCTGGCGTGGCTGGGCCTTATGGCGCGACTGTGGCAATTCATCCCCGCGATTA
TCGGCGTGTGATCGACACCAATATTTTTGGCACGTACCATGGCTCAATTACTGCACTCAAATATTTCCAACAACAAGGCC
ATGGCAAATTGATCAATCTGTTTGGGCGTGGTGATACTGGGCCTGTGCCGTTTCAAACCGCCTATGGCGCTAGCAAAAGC
TGGGTGCGCAACTTTACCTTGGCCCTCGCCAAAGAACATCGTAACCAAGGCATCGAAATTTTGGGCTTTAACCCAGGCTT
GATGACCACCGATATGCTGACCGATGTGCAAGTGATGGCGGGCTACGAGTCCAAACTTGAAGCCCTCAGTACCATTTTGC
GCATGTGGGGCAATCCGCCTAGTGTGCCGGCGCAAAAAGCGGTTTGGCTTGCATCGAAGGCCACCGATGGCCGCAATGGC
TTGAGCATCAGCCTACTTTCGCCACCACGCTTGTTGCTGGGCGCACTCAAAGAAGCAATTCGGCGTGTACGCGGCAAGCC
TGCTCCAGCATTACCAATCAAACTGACCACCATCGATTAA

Upstream 100 bases:

>100_bases
GGTAAGTTCAGCCGCGAACAACTTTCTGAGCACCAGCCCGATTTGCTGCTCGAAAATTTGGGCGAATTGGCCCAGCTTCA
GGCATTTTTAGGAGTAGCCG

Downstream 100 bases:

>100_bases
GGATTGATTGAGCAACGAAACCATGCAGCGAGGTTGGGTCGGGAATTGAAAATACTAAAACTCAACCAACCAAAAGAGCA
CTAAATCTGTCTTATATTGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: GLCDH-II; GDH-II; General stress protein 74; GSP74 [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKLLDKVIVITGGSRGLGLAMAEAMLSQGAKVVIAGRDQASLEQALAQLKRQSSHVLATTCDVGDLAAIEALRDQTIAQF
GKLDVWVNNAGVAGPYGATVAIHPRDYRRVIDTNIFGTYHGSITALKYFQQQGHGKLINLFGRGDTGPVPFQTAYGASKS
WVRNFTLALAKEHRNQGIEILGFNPGLMTTDMLTDVQVMAGYESKLEALSTILRMWGNPPSVPAQKAVWLASKATDGRNG
LSISLLSPPRLLLGALKEAIRRVRGKPAPALPIKLTTID

Sequences:

>Translated_279_residues
MKLLDKVIVITGGSRGLGLAMAEAMLSQGAKVVIAGRDQASLEQALAQLKRQSSHVLATTCDVGDLAAIEALRDQTIAQF
GKLDVWVNNAGVAGPYGATVAIHPRDYRRVIDTNIFGTYHGSITALKYFQQQGHGKLINLFGRGDTGPVPFQTAYGASKS
WVRNFTLALAKEHRNQGIEILGFNPGLMTTDMLTDVQVMAGYESKLEALSTILRMWGNPPSVPAQKAVWLASKATDGRNG
LSISLLSPPRLLLGALKEAIRRVRGKPAPALPIKLTTID
>Mature_279_residues
MKLLDKVIVITGGSRGLGLAMAEAMLSQGAKVVIAGRDQASLEQALAQLKRQSSHVLATTCDVGDLAAIEALRDQTIAQF
GKLDVWVNNAGVAGPYGATVAIHPRDYRRVIDTNIFGTYHGSITALKYFQQQGHGKLINLFGRGDTGPVPFQTAYGASKS
WVRNFTLALAKEHRNQGIEILGFNPGLMTTDMLTDVQVMAGYESKLEALSTILRMWGNPPSVPAQKAVWLASKATDGRNG
LSISLLSPPRLLLGALKEAIRRVRGKPAPALPIKLTTID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=30.9644670050761, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI31542939, Length=249, Percent_Identity=27.3092369477912, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=26.3157894736842, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI40254992, Length=198, Percent_Identity=29.7979797979798, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI19923817, Length=199, Percent_Identity=26.6331658291457, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4758504, Length=207, Percent_Identity=31.4009661835749, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=30.2857142857143, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI5031737, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI59889578, Length=221, Percent_Identity=29.8642533936652, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=25.5434782608696, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI10190704, Length=188, Percent_Identity=30.8510638297872, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI186928839, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI40548397, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI214010158, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI214010156, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI22758144, Length=209, Percent_Identity=28.2296650717703, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=31.5789473684211, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=27.2251308900524, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787335, Length=200, Percent_Identity=28, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790717, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI2367365, Length=226, Percent_Identity=30.5309734513274, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082100, Length=240, Percent_Identity=25.8333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=26.7489711934156, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786812, Length=193, Percent_Identity=28.4974093264249, Blast_Score=68, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=235, Percent_Identity=26.3829787234043, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=210, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=226, Percent_Identity=28.7610619469027, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115534694, Length=189, Percent_Identity=29.1005291005291, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=211, Percent_Identity=27.4881516587678, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=208, Percent_Identity=26.9230769230769, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=27.5735294117647, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=195, Percent_Identity=28.7179487179487, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=198, Percent_Identity=24.7474747474747, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=199, Percent_Identity=28.1407035175879, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=195, Percent_Identity=31.2820512820513, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=189, Percent_Identity=27.5132275132275, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=192, Percent_Identity=30.7291666666667, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6322227, Length=248, Percent_Identity=25.4032258064516, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6323882, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=252, Percent_Identity=27.7777777777778, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI23397609, Length=199, Percent_Identity=30.1507537688442, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21355319, Length=189, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=28.8617886178862, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221331218, Length=204, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24665247, Length=204, Percent_Identity=28.921568627451, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI221331216, Length=204, Percent_Identity=28.921568627451, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571526, Length=189, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI17737361, Length=201, Percent_Identity=31.8407960199005, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24580925, Length=255, Percent_Identity=28.6274509803922, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI116007236, Length=233, Percent_Identity=25.7510729613734, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=27.3684210526316, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=29.6116504854369, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=30.5, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356301, Length=184, Percent_Identity=26.6304347826087, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665264, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007238, Length=179, Percent_Identity=28.4916201117318, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=192, Percent_Identity=26.5625, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24663911, Length=241, Percent_Identity=26.9709543568465, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 29954; Mature: 29954

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDKVIVITGGSRGLGLAMAEAMLSQGAKVVIAGRDQASLEQALAQLKRQSSHVLATT
CCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
CDVGDLAAIEALRDQTIAQFGKLDVWVNNAGVAGPYGATVAIHPRDYRRVIDTNIFGTYH
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCEEEEC
GSITALKYFQQQGHGKLINLFGRGDTGPVPFQTAYGASKSWVRNFTLALAKEHRNQGIEI
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCEE
LGFNPGLMTTDMLTDVQVMAGYESKLEALSTILRMWGNPPSVPAQKAVWLASKATDGRNG
EEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCC
LSISLLSPPRLLLGALKEAIRRVRGKPAPALPIKLTTID
EEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKLLDKVIVITGGSRGLGLAMAEAMLSQGAKVVIAGRDQASLEQALAQLKRQSSHVLATT
CCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEE
CDVGDLAAIEALRDQTIAQFGKLDVWVNNAGVAGPYGATVAIHPRDYRRVIDTNIFGTYH
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCEEEEC
GSITALKYFQQQGHGKLINLFGRGDTGPVPFQTAYGASKSWVRNFTLALAKEHRNQGIEI
CHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCEE
LGFNPGLMTTDMLTDVQVMAGYESKLEALSTILRMWGNPPSVPAQKAVWLASKATDGRNG
EEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEEECCCCCCCC
LSISLLSPPRLLLGALKEAIRRVRGKPAPALPIKLTTID
EEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9298659 [H]