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The map label for this gene is ysgA [H]

Identifier: 159900340

GI number: 159900340

Start: 4797258

End: 4798043

Strand: Direct

Name: ysgA [H]

Synonym: Haur_3823

Alternate gene names: 159900340

Gene position: 4797258-4798043 (Clockwise)

Preceding gene: 159900328

Following gene: 159900342

Centisome position: 75.59

GC content: 53.44

Gene sequence:

>786_bases
ATGTTAACCAGCAAACATAATCCAGCCATTAAGCAAATTCGGGCGTTGCGCCAACGCCGTGAGCGCGAAGCCACTGGTCT
TTTTTTTATTGAAGGTATTCGCAATGTGACCGAGGCGGTGCAAGCCCAAGCGCCGATTGAGCAATTGATCGTTGCGCCCG
ACCTGTTGCGTAGCCAATTTGCCCAAGATTTAGTTGAGCAACAGCGTCAACAAGCCATACCTATCCTCGAAGTCAGCGGC
GAGGTTTTTGCCAGCCTTTCGAGCAAAGATGGCCCACAAGGTTTAGCAGCAGTTGTGCGCCAGCAATGGGCCAGTTTAGC
CGATGTTAGGCCCGACCAAGGCCTGTGTTGGATTGCGCTCAACGCGATTAGTGATCCTGGGAATTTGGGCACAATTTTGC
GCACTGGCGATGCTGTTGGCGCAGCAGGCGTGATTTTATTGGGCGATTGCACCGATCCCTATGATCCAGCGACCGGGCGA
GCTAGTATGGGAACGTTATTCAGCCAACGCTTGGTTAAGGCAACTTGGGCTGAATTTAGCCAATGGTTTGGCCAAAGTGG
CTTTAATTTGGTTGGGGCGGCGGATTCAGCCAGCAGCCACTATCGCGACTATGCCTATCCCCAGCCGCTGATTTTGCTGA
TGGGCAGTGAGCGCGAAGGCTTGGATGCCGAGCAACAAGCCCAATGCCAAGCCTTGGTCAGCATTCCAATGCGTGGCCAA
GCCGATTCGCTGAATTTGGCGGTGGCCACAGGGGTGCTGTTGTATGAAATTTTGGCACAGCGCTAA

Upstream 100 bases:

>100_bases
GCTTAGTAGAATAGAGCTAGGATGGGATGAGATGAGATACCTTTGAGCAAATTGCTTGTTACAATAGCCAACAGCATGAT
TTCAACCAGAAAGTTTGGCA

Downstream 100 bases:

>100_bases
TCAAAAAAATGGCCTGTAATTCCAATCATTACAGGCCATTTCGAGTTTATTTATTGCTTATCGGGGCAAAAACTTGATAC
GAGCTGGTTAAGTGATATAC

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MLTSKHNPAIKQIRALRQRREREATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQFAQDLVEQQRQQAIPILEVSG
EVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIALNAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGR
ASMGTLFSQRLVKATWAEFSQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ
ADSLNLAVATGVLLYEILAQR

Sequences:

>Translated_261_residues
MLTSKHNPAIKQIRALRQRREREATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQFAQDLVEQQRQQAIPILEVSG
EVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIALNAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGR
ASMGTLFSQRLVKATWAEFSQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ
ADSLNLAVATGVLLYEILAQR
>Mature_261_residues
MLTSKHNPAIKQIRALRQRREREATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQFAQDLVEQQRQQAIPILEVSG
EVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIALNAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGR
ASMGTLFSQRLVKATWAEFSQWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ
ADSLNLAVATGVLLYEILAQR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=221, Percent_Identity=26.2443438914027, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1790623, Length=151, Percent_Identity=33.7748344370861, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1790083, Length=156, Percent_Identity=28.2051282051282, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28247; Mature: 28247

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTSKHNPAIKQIRALRQRREREATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQF
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AQDLVEQQRQQAIPILEVSGEVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIAL
HHHHHHHHHHHCCCEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFSQRLVKATWAEFS
ECCCCCCCCCHHEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ
HHHCCCCCEEEECCCCCHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
ADSLNLAVATGVLLYEILAQR
CCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTSKHNPAIKQIRALRQRREREATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQF
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AQDLVEQQRQQAIPILEVSGEVFASLSSKDGPQGLAAVVRQQWASLADVRPDQGLCWIAL
HHHHHHHHHHHCCCEEEECHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
NAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFSQRLVKATWAEFS
ECCCCCCCCCHHEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QWFGQSGFNLVGAADSASSHYRDYAYPQPLILLMGSEREGLDAEQQAQCQALVSIPMRGQ
HHHCCCCCEEEECCCCCHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
ADSLNLAVATGVLLYEILAQR
CCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]