| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159899932
Identifier: 159899932
GI number: 159899932
Start: 4301306
End: 4302748
Strand: Reverse
Name: 159899932
Synonym: Haur_3415
Alternate gene names: NA
Gene position: 4302748-4301306 (Counterclockwise)
Preceding gene: 159899935
Following gene: 159899931
Centisome position: 67.8
GC content: 51.42
Gene sequence:
>1443_bases ATGCCCGATGTAGCCCCTTTTCGTCAGTATCAACTCGAAACCGCTTACGATGAGTTGTTTCTTGGCCCAAACACGCCTCG TCCACATTATCGGCTACTGTCGGAACGGCTGCGCGAGTTGCCGCCTGATGAGTTGGCTCGTCGCCAGCAAGCGGCGGATT TGGCTTTTCTCAATCAAGGAATTACCTTTACAGTCTATGGTCGCGATGAAGGCACTGAGCGCATTTTCCCCTATGATTTG CTGCCACGGCTGTTGACCGCCAAAGAGTGGGATACGATTGAGCGTGGGTTGGCGCAGCGGGTTACGGCATTAAATTTGTT TTTGCGCGATATTTACCACGAGGAAACAATTTTAAAAGCCGGAGTTGTGCCGCGCGAATTGGTCTATAGCTGTCGCCATT TTTCGCGCCAAATGCGGGGAGTTAGCGTGCCACGCGATCGCTATGTTTCGATCGTTGGCACCGATTTGATCCGTTTGCCA AGCGGCCAATTTGCGGTACTAGAAGATAATTTGCGAGTTCCCAGTGGCGTGTCGTATATGCTGGCCAATCGTTTGGTGAT GAAACGCGTGTTTCCACAGTTGTTTTCGAGCTATGGGGTGCGCTCGATCGACCATTATGGCCAAGCCTTGTTGGCAACCT TGCGCTCGTTAGCGCCGCAAGGCCGCAGCGACCCAACGATTGTGCTGCTTACGCCTGGGGTTTTTAATTCAGCTTACTAC GAACACACCTTTTTGGCCCGCCAGATGGGGGTTGAGCTGGTCGAAGGCCGCGATTTAATTGTTCACGATAATGTGGTGTA TATGCGCACGACCGCTGGTTTGCGCCGCGTTGATGTGATTTATCGGCGAGTCGATGATGAATTTATTGATCCTTTAGCAT TTCGGCCTGATTCAGTGCTGGGCGTGGCAGGCTTGTTGAATGCCTATCGGGCTGGCAATGTGGCTTTGGCCAATGCCTTG GGCACAGGGGTAGCCGATGATAAAGCGATTTATGCCTATGTGCCAGCGATGATTAAATTCTATCTTGATGAAGACCCGAT TTTGCCCAATGTCGAAACCTTTTTGCTCAGCGATGATCGTCAACGTCAGCATGTGCTGAATAACTTGGATTCATTGGTGG TCAAGGCGGTCGGCGAATCGGGTGGCTACGATATGCTGATTGGGCCACATAGCACAATCGAGCAACGTAGCCAGTTTCGC GATCGCATTATTGCCAACCCCCGCAACTACATTGCCCAACCAACCCTTGCGCTTTCCAAAGCTCCCTGTTTTATTGATGG CAAACTCGAATCTCGCCACGTCGATTTACGTCCCTACATTTTGTTTGGCGATCAAATTAGCATTGTGCCTGGCGGCCTGA CGCGGGTAGCCTTGCGGCGTGGCTCGTTGGTGGTCAATTCATCGCAAGGTGGCGGCAGCAAAGATACATGGGTTCTTTAT TAA
Upstream 100 bases:
>100_bases AATCTGTGGAGATCGGTACTATAGGCCATCTTCTTTCCCCCCAACGCGGCGATGTTGCCTCAAATCCCTTCAATGCTGAA CAGACTGCAAGGAGCACGCT
Downstream 100 bases:
>100_bases GGATGAAGTATGAGGGATGAGGGATGAAAAAGAGCATAGAACATAGAGTATAGGAGTTGGGGATTGGGGAGCACGATGCC CTCACCCCCTAGCCCCAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MPDVAPFRQYQLETAYDELFLGPNTPRPHYRLLSERLRELPPDELARRQQAADLAFLNQGITFTVYGRDEGTERIFPYDL LPRLLTAKEWDTIERGLAQRVTALNLFLRDIYHEETILKAGVVPRELVYSCRHFSRQMRGVSVPRDRYVSIVGTDLIRLP SGQFAVLEDNLRVPSGVSYMLANRLVMKRVFPQLFSSYGVRSIDHYGQALLATLRSLAPQGRSDPTIVLLTPGVFNSAYY EHTFLARQMGVELVEGRDLIVHDNVVYMRTTAGLRRVDVIYRRVDDEFIDPLAFRPDSVLGVAGLLNAYRAGNVALANAL GTGVADDKAIYAYVPAMIKFYLDEDPILPNVETFLLSDDRQRQHVLNNLDSLVVKAVGESGGYDMLIGPHSTIEQRSQFR DRIIANPRNYIAQPTLALSKAPCFIDGKLESRHVDLRPYILFGDQISIVPGGLTRVALRRGSLVVNSSQGGGSKDTWVLY
Sequences:
>Translated_480_residues MPDVAPFRQYQLETAYDELFLGPNTPRPHYRLLSERLRELPPDELARRQQAADLAFLNQGITFTVYGRDEGTERIFPYDL LPRLLTAKEWDTIERGLAQRVTALNLFLRDIYHEETILKAGVVPRELVYSCRHFSRQMRGVSVPRDRYVSIVGTDLIRLP SGQFAVLEDNLRVPSGVSYMLANRLVMKRVFPQLFSSYGVRSIDHYGQALLATLRSLAPQGRSDPTIVLLTPGVFNSAYY EHTFLARQMGVELVEGRDLIVHDNVVYMRTTAGLRRVDVIYRRVDDEFIDPLAFRPDSVLGVAGLLNAYRAGNVALANAL GTGVADDKAIYAYVPAMIKFYLDEDPILPNVETFLLSDDRQRQHVLNNLDSLVVKAVGESGGYDMLIGPHSTIEQRSQFR DRIIANPRNYIAQPTLALSKAPCFIDGKLESRHVDLRPYILFGDQISIVPGGLTRVALRRGSLVVNSSQGGGSKDTWVLY >Mature_479_residues PDVAPFRQYQLETAYDELFLGPNTPRPHYRLLSERLRELPPDELARRQQAADLAFLNQGITFTVYGRDEGTERIFPYDLL PRLLTAKEWDTIERGLAQRVTALNLFLRDIYHEETILKAGVVPRELVYSCRHFSRQMRGVSVPRDRYVSIVGTDLIRLPS GQFAVLEDNLRVPSGVSYMLANRLVMKRVFPQLFSSYGVRSIDHYGQALLATLRSLAPQGRSDPTIVLLTPGVFNSAYYE HTFLARQMGVELVEGRDLIVHDNVVYMRTTAGLRRVDVIYRRVDDEFIDPLAFRPDSVLGVAGLLNAYRAGNVALANALG TGVADDKAIYAYVPAMIKFYLDEDPILPNVETFLLSDDRQRQHVLNNLDSLVVKAVGESGGYDMLIGPHSTIEQRSQFRD RIIANPRNYIAQPTLALSKAPCFIDGKLESRHVDLRPYILFGDQISIVPGGLTRVALRRGSLVVNSSQGGGSKDTWVLY
Specific function: Unknown
COG id: COG2308
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis RV2411c [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007297 - InterPro: IPR007302 - InterPro: IPR016450 [H]
Pfam domain/function: PF04169 DUF404; PF04174 DUF407 [H]
EC number: NA
Molecular weight: Translated: 54059; Mature: 53927
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDVAPFRQYQLETAYDELFLGPNTPRPHYRLLSERLRELPPDELARRQQAADLAFLNQG CCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC ITFTVYGRDEGTERIFPYDLLPRLLTAKEWDTIERGLAQRVTALNLFLRDIYHEETILKA CEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVVPRELVYSCRHFSRQMRGVSVPRDRYVSIVGTDLIRLPSGQFAVLEDNLRVPSGVSYM CCCHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCEECCCCCEEEEECCCCCCCCHHHH LANRLVMKRVFPQLFSSYGVRSIDHYGQALLATLRSLAPQGRSDPTIVLLTPGVFNSAYY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH EHTFLARQMGVELVEGRDLIVHDNVVYMRTTAGLRRVDVIYRRVDDEFIDPLAFRPDSVL HHHHHHHHHCCEEECCCEEEEECCEEEEEECCCHHHHHHHHHHHCHHHCCCCCCCCCHHH GVAGLLNAYRAGNVALANALGTGVADDKAIYAYVPAMIKFYLDEDPILPNVETFLLSDDR HHHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCH QRQHVLNNLDSLVVKAVGESGGYDMLIGPHSTIEQRSQFRDRIIANPRNYIAQPTLALSK HHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHCC APCFIDGKLESRHVDLRPYILFGDQISIVPGGLTRVALRRGSLVVNSSQGGGSKDTWVLY CCEEEECCCCCCEECCCEEEEECCEEEECCCCHHHHHHHCCCEEEECCCCCCCCCCEEEC >Mature Secondary Structure PDVAPFRQYQLETAYDELFLGPNTPRPHYRLLSERLRELPPDELARRQQAADLAFLNQG CCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC ITFTVYGRDEGTERIFPYDLLPRLLTAKEWDTIERGLAQRVTALNLFLRDIYHEETILKA CEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVVPRELVYSCRHFSRQMRGVSVPRDRYVSIVGTDLIRLPSGQFAVLEDNLRVPSGVSYM CCCHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCEECCCCCEEEEECCCCCCCCHHHH LANRLVMKRVFPQLFSSYGVRSIDHYGQALLATLRSLAPQGRSDPTIVLLTPGVFNSAYY HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH EHTFLARQMGVELVEGRDLIVHDNVVYMRTTAGLRRVDVIYRRVDDEFIDPLAFRPDSVL HHHHHHHHHCCEEECCCEEEEECCEEEEEECCCHHHHHHHHHHHCHHHCCCCCCCCCHHH GVAGLLNAYRAGNVALANALGTGVADDKAIYAYVPAMIKFYLDEDPILPNVETFLLSDDR HHHHHHHHHHCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCH QRQHVLNNLDSLVVKAVGESGGYDMLIGPHSTIEQRSQFRDRIIANPRNYIAQPTLALSK HHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHCC APCFIDGKLESRHVDLRPYILFGDQISIVPGGLTRVALRRGSLVVNSSQGGGSKDTWVLY CCEEEECCCCCCEECCCEEEEECCEEEECCCCHHHHHHHCCCEEEECCCCCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368738; 8590279; 8905231 [H]