Click here to switch to the map view.

The map label for this gene is yfiN [H]

Identifier: 159898413

GI number: 159898413

Start: 2278018

End: 2279259

Strand: Reverse

Name: yfiN [H]

Synonym: Haur_1889

Alternate gene names: 159898413

Gene position: 2279259-2278018 (Counterclockwise)

Preceding gene: 159898414

Following gene: 159898412

Centisome position: 35.91

GC content: 49.52

Gene sequence:

>1242_bases
ATGATTACCAAAGCCCTAACCATTGCCCTAGCCTATCTCCAAACGATCACGCGAAATCGCAGTTTTCTCTTTCAGATGAT
CGTTATTCCGCTGCTGCTGACATTTATCATTGGTCAAGCAATTGGCGGCGGTGCTGATGAGTTGCCCGACCCTAACACCA
AGTGGCGCATGGTTATTGCCAACGAAGATACAGGCAGTCTTGCAACCCAGTTGGTCGAGTATTTGCAAAGCACACCACGC
TTAGAGGTTCAGCTCGTTGATCGCGCTGCCGCCAACGCCGCAGTTGCCAGCGCCGATACTGGGGTAATCGGCGCATTGAT
CATCCCAGCTGATTTCAGCACGAAATTTGCCAGCGATCAAGCAGTTACCCTCGATTATGCTAGTTTTGTCGCCAGCGTTG
AATCACAGTATCTTGAACAATCAGTTGATACTGCGCTCGGTCAATTGAGCCATTCGCTAAATGCTGCCGATGTTTCAGCC
GATGTTGCTGATGAATTGGGGCTTTTTGCAACAAGCGATAATCCAACAACCGCCCAACAAACCTATCGTGATGATGCGGT
TGAGCGAGCATTGACCGCTTGGGAAACCAATCCGCCGGTGGTGGTTGAAGCCGAGCAAGCAAGCTTTCAACAATCGGATG
ATGGTGTACCACGGGGCCTCAATCAAACCTCACCAGGGTTGTTGGTTATGTTTGCCTTCTTCTTCACAATTGGCGGTGGC
TCATCACTGATTCAAGAACGCACAATTGGAACCTTGCAACGCCTGATGGTTATGCCAATGCGCAAAAGCACCATTCTCTT
TGGCAAATTGCTTGGCATCTACATTGGCTGTTTGATCCAAATTGGCATTTTGGTGTTAGCAGGCGCGTTTCTTTTCAATG
TTGATTGGGGCAATTCACCAATCGCTATGCTGGTGTTCATTCCAGTATTTGCCCTGAATGCAACCAGCCTGAGCATCATG
TTGGCAGCCCTTGTGCAAACTGATGCCCAACTCAACTCAGTCAGCACGATCGTGGTTATGGCGCTAGCCGCCCTAGGGGG
AGCATGGTGGCCAATCGAAATCGTGCCTGAATGGATGCAACAACTTGGCCATGCTTTACCAAGCGCATGGGCTATGGATG
GCTTCAACGATATCATCACTCGCGGTTTAGGCCTTGAAGCGGTGCTCTTCGAAATTGGCGTGCTGATGGCTTTTACCGTC
GGGTTTTTCATTATTGGTATTTGGCGCTTTCGCTATGAATAA

Upstream 100 bases:

>100_bases
CAAGATGTGTTTTTAGAAGCTGGTGTATTGCTTGGGATCGCCCTGGTATGCTTTACCCTAGCGGCTTGGCGGTTACCCCG
CCGTTTTGCGAGGTAGAACA

Downstream 100 bases:

>100_bases
CGCTTAATCTACGCGCATTGATCACCAAATGAACGTTCGATAAGGGTTTCAGCAAAGTATTGCTGAAACCCTTCAATCAA
TCAGGTTGGTGGTTTGGCAG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MITKALTIALAYLQTITRNRSFLFQMIVIPLLLTFIIGQAIGGGADELPDPNTKWRMVIANEDTGSLATQLVEYLQSTPR
LEVQLVDRAAANAAVASADTGVIGALIIPADFSTKFASDQAVTLDYASFVASVESQYLEQSVDTALGQLSHSLNAADVSA
DVADELGLFATSDNPTTAQQTYRDDAVERALTAWETNPPVVVEAEQASFQQSDDGVPRGLNQTSPGLLVMFAFFFTIGGG
SSLIQERTIGTLQRLMVMPMRKSTILFGKLLGIYIGCLIQIGILVLAGAFLFNVDWGNSPIAMLVFIPVFALNATSLSIM
LAALVQTDAQLNSVSTIVVMALAALGGAWWPIEIVPEWMQQLGHALPSAWAMDGFNDIITRGLGLEAVLFEIGVLMAFTV
GFFIIGIWRFRYE

Sequences:

>Translated_413_residues
MITKALTIALAYLQTITRNRSFLFQMIVIPLLLTFIIGQAIGGGADELPDPNTKWRMVIANEDTGSLATQLVEYLQSTPR
LEVQLVDRAAANAAVASADTGVIGALIIPADFSTKFASDQAVTLDYASFVASVESQYLEQSVDTALGQLSHSLNAADVSA
DVADELGLFATSDNPTTAQQTYRDDAVERALTAWETNPPVVVEAEQASFQQSDDGVPRGLNQTSPGLLVMFAFFFTIGGG
SSLIQERTIGTLQRLMVMPMRKSTILFGKLLGIYIGCLIQIGILVLAGAFLFNVDWGNSPIAMLVFIPVFALNATSLSIM
LAALVQTDAQLNSVSTIVVMALAALGGAWWPIEIVPEWMQQLGHALPSAWAMDGFNDIITRGLGLEAVLFEIGVLMAFTV
GFFIIGIWRFRYE
>Mature_413_residues
MITKALTIALAYLQTITRNRSFLFQMIVIPLLLTFIIGQAIGGGADELPDPNTKWRMVIANEDTGSLATQLVEYLQSTPR
LEVQLVDRAAANAAVASADTGVIGALIIPADFSTKFASDQAVTLDYASFVASVESQYLEQSVDTALGQLSHSLNAADVSA
DVADELGLFATSDNPTTAQQTYRDDAVERALTAWETNPPVVVEAEQASFQQSDDGVPRGLNQTSPGLLVMFAFFFTIGGG
SSLIQERTIGTLQRLMVMPMRKSTILFGKLLGIYIGCLIQIGILVLAGAFLFNVDWGNSPIAMLVFIPVFALNATSLSIM
LAALVQTDAQLNSVSTIVVMALAALGGAWWPIEIVPEWMQQLGHALPSAWAMDGFNDIITRGLGLEAVLFEIGVLMAFTV
GFFIIGIWRFRYE

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI226510979, Length=176, Percent_Identity=30.6818181818182, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 44512; Mature: 44512

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKALTIALAYLQTITRNRSFLFQMIVIPLLLTFIIGQAIGGGADELPDPNTKWRMVIA
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
NEDTGSLATQLVEYLQSTPRLEVQLVDRAAANAAVASADTGVIGALIIPADFSTKFASDQ
CCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
AVTLDYASFVASVESQYLEQSVDTALGQLSHSLNAADVSADVADELGLFATSDNPTTAQQ
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCHHHH
TYRDDAVERALTAWETNPPVVVEAEQASFQQSDDGVPRGLNQTSPGLLVMFAFFFTIGGG
HHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
SSLIQERTIGTLQRLMVMPMRKSTILFGKLLGIYIGCLIQIGILVLAGAFLFNVDWGNSP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
IAMLVFIPVFALNATSLSIMLAALVQTDAQLNSVSTIVVMALAALGGAWWPIEIVPEWMQ
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QLGHALPSAWAMDGFNDIITRGLGLEAVLFEIGVLMAFTVGFFIIGIWRFRYE
HHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MITKALTIALAYLQTITRNRSFLFQMIVIPLLLTFIIGQAIGGGADELPDPNTKWRMVIA
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
NEDTGSLATQLVEYLQSTPRLEVQLVDRAAANAAVASADTGVIGALIIPADFSTKFASDQ
CCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
AVTLDYASFVASVESQYLEQSVDTALGQLSHSLNAADVSADVADELGLFATSDNPTTAQQ
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCCCHHHH
TYRDDAVERALTAWETNPPVVVEAEQASFQQSDDGVPRGLNQTSPGLLVMFAFFFTIGGG
HHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
SSLIQERTIGTLQRLMVMPMRKSTILFGKLLGIYIGCLIQIGILVLAGAFLFNVDWGNSP
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
IAMLVFIPVFALNATSLSIMLAALVQTDAQLNSVSTIVVMALAALGGAWWPIEIVPEWMQ
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
QLGHALPSAWAMDGFNDIITRGLGLEAVLFEIGVLMAFTVGFFIIGIWRFRYE
HHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]