Click here to switch to the map view.

The map label for this gene is yfiM [H]

Identifier: 159898414

GI number: 159898414

Start: 2279264

End: 2280508

Strand: Reverse

Name: yfiM [H]

Synonym: Haur_1890

Alternate gene names: 159898414

Gene position: 2280508-2279264 (Counterclockwise)

Preceding gene: 159898415

Following gene: 159898413

Centisome position: 35.93

GC content: 50.6

Gene sequence:

>1245_bases
TTGAAAGCACTAACTATTGCCTGGAAAGATACACTCATTCGATTTCGCGATATTAACGCATTGCTCTTGATGATTCTTGC
ACCGTTGGTCATCTCGGGAATTATGGGCGCAGCCTTTGGCAATCAAAGTGCCACCCCAACCATCAGCGATATTCCGTTGA
TTGTGGTCAACCAAGATCAAGGGGTGTTAGGTCAACGCTTTATCGAAGCATTGAATGCTGGTGAGTTGGCCGATTTGCTC
GAACCAACCATTATGACCGATGCGGAAGCGGCCAAAGATCTGGTGGAAACTGGCGAAGTTCGGGCGGTGGTACTGATTCC
TAGTGATTTCAGTGCCAGTCTCGAAACAACCCAAACTAACGATGCCGGCCAACAGCCTGCCAAAATTATGGTCTACACCG
ACCCAGCGGCCCGCATCACACCCACGATTGTCCGCAGCGTGGTAACTGAAATTGCCAATGTTTTCAGCAACACCGCCATC
GCTAGCGAAATTACGGTTGCCCAAATTGTCGAGCAACTTGGTGGCAATAACCCCGCCTTGGCCAACTTGGAGCCAGCCCT
AAACCAAAGCCTGCCAAGCTTGACAGCAGCTCAACCAAGCGCTCAAGTCCAAGCCCGGGTTATCTCAAGCACCTCGGCTA
ATCTCGACCCAATTGCCTTTTTTGCCCCAAGCATGGCGATTTTCTTCCTGATGTTCACCATGTTTGATGGCACACGCTCG
CTCTTGGTCGAGCAAATCAATGGGACGATGAGTCGCCTCAAAAGCACGCCAACCGGAATCGGCCAAATTTTGATCGGTAA
ATTACTGGGAACTTTCTTAACCGGCAGCGCTCAATTTGTCTGTTTGGTGGTTTCCTCATCGTTGATCTTCGGCCTCGATT
GGGGTGATTCAATCGCCGGATTGGCCCTGATGTTGGTGGCATTTGTGGCAGCAGCAACAGGCCTCGGCAGTGTTATCACG
GCCTTCTCACGCGATTTGCCCCAAGCAAATCTGCTGGGTTCGATGATCACGTTGTTGTTTGGCTTTTTGGGCGGCAACTT
CTTTATGATCGAAAATTTTCCGCAGTGGTTGCAAATTCTCAGTAAACTAACGGTGAATCGTTGGGGACTCGATGGATTTA
GCGATCTGACGGTACGGGGACTTGGCATTCAAGATGTGTTTTTAGAAGCTGGTGTATTGCTTGGGATCGCCCTGGTATGC
TTTACCCTAGCGGCTTGGCGGTTACCCCGCCGTTTTGCGAGGTAG

Upstream 100 bases:

>100_bases
ACCTCGAATCGGTGTTCTTGCATCTTACCGGTCGGGCACTTCGCGATTAGCCAACTTGCGCGGATAGCCTTGTGCAGTGG
CGTTCAATAAGGATAGATTC

Downstream 100 bases:

>100_bases
AACAATGATTACCAAAGCCCTAACCATTGCCCTAGCCTATCTCCAAACGATCACGCGAAATCGCAGTTTTCTCTTTCAGA
TGATCGTTATTCCGCTGCTG

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKALTIAWKDTLIRFRDINALLLMILAPLVISGIMGAAFGNQSATPTISDIPLIVVNQDQGVLGQRFIEALNAGELADLL
EPTIMTDAEAAKDLVETGEVRAVVLIPSDFSASLETTQTNDAGQQPAKIMVYTDPAARITPTIVRSVVTEIANVFSNTAI
ASEITVAQIVEQLGGNNPALANLEPALNQSLPSLTAAQPSAQVQARVISSTSANLDPIAFFAPSMAIFFLMFTMFDGTRS
LLVEQINGTMSRLKSTPTGIGQILIGKLLGTFLTGSAQFVCLVVSSSLIFGLDWGDSIAGLALMLVAFVAAATGLGSVIT
AFSRDLPQANLLGSMITLLFGFLGGNFFMIENFPQWLQILSKLTVNRWGLDGFSDLTVRGLGIQDVFLEAGVLLGIALVC
FTLAAWRLPRRFAR

Sequences:

>Translated_414_residues
MKALTIAWKDTLIRFRDINALLLMILAPLVISGIMGAAFGNQSATPTISDIPLIVVNQDQGVLGQRFIEALNAGELADLL
EPTIMTDAEAAKDLVETGEVRAVVLIPSDFSASLETTQTNDAGQQPAKIMVYTDPAARITPTIVRSVVTEIANVFSNTAI
ASEITVAQIVEQLGGNNPALANLEPALNQSLPSLTAAQPSAQVQARVISSTSANLDPIAFFAPSMAIFFLMFTMFDGTRS
LLVEQINGTMSRLKSTPTGIGQILIGKLLGTFLTGSAQFVCLVVSSSLIFGLDWGDSIAGLALMLVAFVAAATGLGSVIT
AFSRDLPQANLLGSMITLLFGFLGGNFFMIENFPQWLQILSKLTVNRWGLDGFSDLTVRGLGIQDVFLEAGVLLGIALVC
FTLAAWRLPRRFAR
>Mature_414_residues
MKALTIAWKDTLIRFRDINALLLMILAPLVISGIMGAAFGNQSATPTISDIPLIVVNQDQGVLGQRFIEALNAGELADLL
EPTIMTDAEAAKDLVETGEVRAVVLIPSDFSASLETTQTNDAGQQPAKIMVYTDPAARITPTIVRSVVTEIANVFSNTAI
ASEITVAQIVEQLGGNNPALANLEPALNQSLPSLTAAQPSAQVQARVISSTSANLDPIAFFAPSMAIFFLMFTMFDGTRS
LLVEQINGTMSRLKSTPTGIGQILIGKLLGTFLTGSAQFVCLVVSSSLIFGLDWGDSIAGLALMLVAFVAAATGLGSVIT
AFSRDLPQANLLGSMITLLFGFLGGNFFMIENFPQWLQILSKLTVNRWGLDGFSDLTVRGLGIQDVFLEAGVLLGIALVC
FTLAAWRLPRRFAR

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 44055; Mature: 44055

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALTIAWKDTLIRFRDINALLLMILAPLVISGIMGAAFGNQSATPTISDIPLIVVNQDQ
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
GVLGQRFIEALNAGELADLLEPTIMTDAEAAKDLVETGEVRAVVLIPSDFSASLETTQTN
CHHHHHHHHHHCCCHHHHHHCCHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
DAGQQPAKIMVYTDPAARITPTIVRSVVTEIANVFSNTAIASEITVAQIVEQLGGNNPAL
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
ANLEPALNQSLPSLTAAQPSAQVQARVISSTSANLDPIAFFAPSMAIFFLMFTMFDGTRS
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
LLVEQINGTMSRLKSTPTGIGQILIGKLLGTFLTGSAQFVCLVVSSSLIFGLDWGDSIAG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCHHHH
LALMLVAFVAAATGLGSVITAFSRDLPQANLLGSMITLLFGFLGGNFFMIENFPQWLQIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
SKLTVNRWGLDGFSDLTVRGLGIQDVFLEAGVLLGIALVCFTLAAWRLPRRFAR
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKALTIAWKDTLIRFRDINALLLMILAPLVISGIMGAAFGNQSATPTISDIPLIVVNQDQ
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
GVLGQRFIEALNAGELADLLEPTIMTDAEAAKDLVETGEVRAVVLIPSDFSASLETTQTN
CHHHHHHHHHHCCCHHHHHHCCHHCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
DAGQQPAKIMVYTDPAARITPTIVRSVVTEIANVFSNTAIASEITVAQIVEQLGGNNPAL
CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
ANLEPALNQSLPSLTAAQPSAQVQARVISSTSANLDPIAFFAPSMAIFFLMFTMFDGTRS
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHH
LLVEQINGTMSRLKSTPTGIGQILIGKLLGTFLTGSAQFVCLVVSSSLIFGLDWGDSIAG
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCCHHHH
LALMLVAFVAAATGLGSVITAFSRDLPQANLLGSMITLLFGFLGGNFFMIENFPQWLQIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
SKLTVNRWGLDGFSDLTVRGLGIQDVFLEAGVLLGIALVCFTLAAWRLPRRFAR
HHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]